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(-) Description

Title :  FIC PROTEIN FROM NEISSERIA MENINGITIDIS (NMFIC) MUTANT E102R IN DIMERIC FORM
 
Authors :  F. V. Stanger, T. Schirmer
Date :  09 Jul 15  (Deposition) - 27 Jan 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Fic Protein, Amp-Transferase, Dimer, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. V. Stanger, B. M. Burmann, A. Harms, H. Aragao, A. Mazur, T. Sharpe, C. Dehio, S. Hiller, T. Schirmer
Intrinsic Regulation Of Fic-Domain Amp-Transferases By Oligomerization And Automodification.
Proc. Natl. Acad. Sci. Usa V. 113 E529 2016
PubMed-ID: 26787847  |  Reference-DOI: 10.1073/PNAS.1516930113

(-) Compounds

Molecule 1 - ADENOSINE MONOPHOSPHATE-PROTEIN TRANSFERASE NMFIC
    Chains: A, B
    EC Number: 2.7.7.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PRSFDUET1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 11-191
    Gene: NMB0255
    Mutation: YES
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 487
    Synonym: AMPYLATOR NMFIC

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:111 , GLY A:112 , ASN A:113 , GLY A:114 , ARG A:115 , GLU A:186binding site for residue PEG A 201
2AC2SOFTWAREGLU B:111 , GLY B:112 , ASN B:113 , GLY B:114 , ARG B:115 , GLU B:186binding site for residue PEG B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CGL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CGL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CGL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CGL)

(-) Exons   (0, 0)

(no "Exon" information available for 5CGL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...........hhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhhh...hhhhhhhhhh.ee....hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cgl A  13 SIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIRLKEALVKIEQMPERTFEEIIAKYVRMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTDDVDNREIIFKGIEQSYYYEGYE 189
                                    22        32        42        52        78        88        98       108       118       128       138       148       158       168       178       188 
                                                                           61|                                                                                                               
                                                                            78                                                                                                               


Chain B from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh...........hhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.ee.hhhhhhhhhhhhhhhh...hhhhhhhhhh.ee....hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cgl B  12 KSIDEQSLHNARRLFESGDIDRIEVGTTAGLQQIHRYLFGGLYDFAGQIRYLKEALVKIEQMPERTFEEIIAKYVRMNIAHPFLEGNGRSTRIWLDLVLKKNLKKVVNWQNVSKTLYLQAMERSPVNDLELRFLLKDNLTDDVDNREIIFKGIEQSYYYEGYE 189
                                    21        31        41        51        61|       86        96       106       116       126       136       146       156       166       176       186   
                                                                            61|                                                                                                                
                                                                             77
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CGL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CGL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CGL)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  5cgl
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NMFIC_NEIMB | Q7DDR9: 2g03 3s6a 3se5 3sn9 3zlm 5ckl 5cmt

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5CGL)