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(-) Description

Title :  STRUCTURE OF HYDROXYETHYLTHIAZOLE KINASE THIM FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH SUBSTRATE ANALOG 2-(1,3,5-TRIMETHYL-1H-PYRAZOLE-4-YL)ETHANOL
 
Authors :  M. Kuenz, J. Drebes, B. Windshuegel, H. Cang, C. Wrenger, C. Betzel
Date :  09 Jul 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym. Unit :  A,B,C,E,F,H
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  E,F,H  (1x)
Keywords :  Bacterial Thiamine Biosynthesis, Hydroxyethylthiazole Kinase, Substrate Analog, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Drebes, M. Kunz, B. Windshugel, A. G. Kikhney, I. B. Muller, R. J. Eberle, D. Oberthur, H. Cang, D. I. Svergun, M. Perbandt, C. Betzel, C. Wrenger
Structure Of Thim From Vitamin B1 Biosynthetic Pathway Of Staphylococcus Aureus - Insights Into A Novel Pro-Drug Approach Addressing Mrsa Infections.
Sci Rep V. 6 22871 2016
PubMed-ID: 26960569  |  Reference-DOI: 10.1038/SREP22871

(-) Compounds

Molecule 1 - HYDROXYETHYLTHIAZOLE KINASE
    Chains: A, B, C, E, F, H
    EC Number: 2.7.1.50
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PASK-IBA3
    Expression System Taxid: 469008
    Expression System Variant: BLR
    Expression System Vector Type: PLASMID
    Gene: THIM, SAR2181
    Organism Scientific: STAPHYLOCOCCUS AUREUS MRSA252
    Organism Taxid: 282458
    Strain: MRSA252
    Synonym: 4-METHYL-5-BETA-HYDROXYETHYLTHIAZOLE KINASE,THZ KINASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCEFH
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    EFH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1KP66Ligand/Ion2-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)ETHANOL
2MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1KP63Ligand/Ion2-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)ETHANOL
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1KP63Ligand/Ion2-(1,3,5-TRIMETHYL-1H-PYRAZOL-4-YL)ETHANOL
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:19 , GLY A:61 , THR A:186 , GLY A:187 , CYS A:190 , PRO B:37 , ALA B:38 , MET B:39binding site for residue KP6 A 301
02AC2SOFTWAREASP A:88 , GLY A:116 , GLU A:120 , HOH A:404 , HOH A:413binding site for residue MG A 302
03AC3SOFTWAREASN B:19 , GLY B:61 , VAL B:90 , THR B:186 , GLY B:187 , PRO C:37 , ALA C:38 , MET C:39binding site for residue KP6 B 301
04AC4SOFTWAREASP B:88 , GLY B:116 , GLU B:120 , HOH B:418binding site for residue MG B 302
05AC5SOFTWAREPRO A:37 , ALA A:38 , MET A:39 , ASN C:19 , GLY C:61 , THR C:186 , GLY C:187 , CYS C:190 , HOH C:429binding site for residue KP6 C 301
06AC6SOFTWAREASP C:88 , GLY C:116 , GLU C:120 , HOH C:412binding site for residue MG C 302
07AC7SOFTWAREASN E:19 , GLY E:61 , THR E:186 , GLY E:187 , PRO F:37 , ALA F:38 , MET F:39binding site for residue KP6 E 301
08AC8SOFTWAREASP E:88 , GLU E:120 , HOH E:441binding site for residue MG E 302
09AC9SOFTWAREASN F:19 , GLY F:61 , THR F:186 , GLY F:187 , HOH F:401 , PRO H:37 , ALA H:38 , MET H:39binding site for residue KP6 F 301
10AD1SOFTWAREPRO E:37 , ALA E:38 , MET E:39 , ASN H:19 , GLY H:61 , THR H:186 , GLY H:187binding site for residue KP6 H 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CGA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CGA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CGA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CGA)

(-) Exons   (0, 0)

(no "Exon" information available for 5CGA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cga A   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEVEEN 265
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||143       153       163       173       183       193       203       213       223       233       243       253       263  
                                                                                                                                                       126|                                                                                                                             
                                                                                                                                                        140                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee....hhhhhhhhhhhhh.eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cga B   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEV 262
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||143       153       163       173       183       193       203       213       223       233       243       253         
                                                                                                                                                       126|                                                                                                                          
                                                                                                                                                        140                                                                                                                          


Chain C from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cga C   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDDTLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEV 262
                                    10        20        30        40        50        60        70        80        90       100       110       120       141       151       161       171       181       191       201       211       221       231       241       251       261 
                                                                                                                                                         128|                                                                                                                          
                                                                                                                                                          140                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cga E   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEVEENLYQ 268
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||143       153       163       173       183       193       203       213       223       233       243       253       263     
                                                                                                                                                       126|                                                                                                                                
                                                                                                                                                        140                                                                                                                                


Chain F from PDB  Type:PROTEIN  Length:245
                                                                                                                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cga F   2 NYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRI 259
                                    11        21        31        41        51        61        71        81        91       101       111       121    || 144       154       164       174       184       194       204       214       224       234       244       254     
                                                                                                                                                      126|                                                                                                                       
                                                                                                                                                       140                                                                                                                       


Chain H from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cga H   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRI 259
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||143       153       163       173       183       193       203       213       223       233       243       253      
                                                                                                                                                       126|                                                                                                                       
                                                                                                                                                        140
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CGA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CGA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CGA)

(-) Gene Ontology  (10, 10)

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  5cga
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        THIM_STAAR | Q6GEY3: 5cge 5cm5 5coj

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