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(-) Description

Title :  CLEAVAGE OF NICOTINAMIDE ADENINE DINUCLEOTIDE BY THE RIBOSOME INACTIVATING PROTEIN OF MOMORDICA CHARANTIA - ENZYME-NADP+ CO-CRYSTALLISATION.
 
Authors :  M. Vinkovic, S. P. Wood, R. Gill, J. Husain, G. E. Wood, G. Dunn
Date :  08 Jul 15  (Deposition) - 22 Jul 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym./Biol. Unit :  B
Keywords :  Product, Complex, Glycosidase, Nadp, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Vinkovic, G. Dunn, G. E. Wood, J. Husain, S. P. Wood, R. Gill
Cleavage Of Nicotinamide Adenine Dinucleotide By The Ribosome-Inactivating Protein From Momordica Charantia.
Acta Crystallogr. , Sect. F V. 71 1152 2015
PubMed-ID: 26323301  |  Reference-DOI: 10.1107/S2053230X15013540

(-) Compounds

Molecule 1 - RIBOSOME-INACTIVATING PROTEIN MOMORDIN I
    Chains: B
    EC Number: 3.2.2.22
    Fragment: RESIDUES 24-269
    Organism Common: BITTER GOURD
    Organism Scientific: MOMORDICA CHARANTIA
    Organism Taxid: 3673
    Synonym: ALPHA-MOMORCHARIN,ALPHA-MMC,RRNA N-GLYCOSIDASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1NAG1Ligand/IonN-ACETYL-D-GLUCOSAMINE
2NCA1Ligand/IonNICOTINAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR B:226 , ASN B:227 , THR B:229 , HOH B:484 , HOH B:537binding site for residue NAG B 301
2AC2SOFTWARETYR B:70 , ILE B:71 , GLY B:109 , TYR B:111 , ILE B:155 , GLU B:160 , ARG B:163binding site for residue NCA B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CF9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CF9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CF9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CF9)

(-) Exons   (0, 0)

(no "Exon" information available for 5CF9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhh..eeeee..eeee....hhhh.eeeeeee.....eeeeeee.....eeeeee..eeee..hhhhhhhh........eeee.....hhhhhhhhhh.hhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeee..hhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cf9 B   1 DVSFRLSGADPRSYGMFIKDLRNALPFREKVYNIPLLLPSVSGAGRYLLMHLFNYDGKTITVAVDVTNVYIMGYLADTTSYFFNEPAAELASQYVFRDARRKITLPYSGNYERLQIAAGKPREKIPIGLPALDSAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQERAYRDEVPSLATISLENSWSGLSKQIQLAQGNNGIFRTPIVLVDNKGNRVQITNVTSKVVTSNIQLLLNTRNI 246
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CF9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CF9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CF9)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIP1_MOMCH | P16094: 1aha 1ahb 1ahc 1f8q 1mom 1mrg 1mrh 1mri 4yp2

(-) Related Entries Specified in the PDB File

4ypt 4YPT CONTAINS THE ENZYME COMPLEX WITH PRODUCT FROM DIRECT COCRYSTALLISATION.