5CB7 - JenaLib

Asymmetric Unit (6, 13)

No.	Name	Count	Type	Full Name
1	A2G	3	Ligand/Ion	N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2	CL	2	Ligand/Ion	CHLORIDE ION
3	FUC	3	Ligand/Ion	ALPHA-L-FUCOSE
4	GAL	1	Ligand/Ion	BETA-D-GALACTOSE
5	GLA	2	Ligand/Ion	ALPHA D-GALACTOSE
6	GOL	2	Ligand/Ion	GLYCEROL

Biological Unit 1 (3, 3)

No.	Name	Count	Type	Full Name
1	A2G	1	Ligand/Ion	N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	1	Ligand/Ion	ALPHA-L-FUCOSE
4	GAL	-1	Ligand/Ion	BETA-D-GALACTOSE
5	GLA	1	Ligand/Ion	ALPHA D-GALACTOSE
6	GOL	-1	Ligand/Ion	GLYCEROL

Biological Unit 2 (5, 8)

No.	Name	Count	Type	Full Name
1	A2G	2	Ligand/Ion	N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	FUC	2	Ligand/Ion	ALPHA-L-FUCOSE
4	GAL	1	Ligand/Ion	BETA-D-GALACTOSE
5	GLA	1	Ligand/Ion	ALPHA D-GALACTOSE
6	GOL	2	Ligand/Ion	GLYCEROL

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLN A:70 , ARG B:101 , TYR B:189 , LEU B:190 , THR B:191 , A2G B:301 , GLA B:302 , FUC B:303 , GAL B:305 , HOH B:412 , HOH B:421 , HOH B:509 , HOH B:548	binding site for residue A2G B 304
2	AC2	SOFTWARE	TYR B:188 , TYR B:189 , A2G B:301 , GLA B:302 , FUC B:303 , A2G B:304 , FUC B:306 , HOH B:439 , HOH B:585	binding site for residue GAL B 305
3	AC3	SOFTWARE	GLA B:302 , FUC B:303 , GAL B:305 , HOH B:405 , HOH B:417 , HOH B:421 , HOH B:491 , HOH B:510 , HOH B:548	binding site for residue FUC B 306
4	AC4	SOFTWARE	TRP B:81 , MET B:168 , ARG B:170 , ASP B:171 , GLN B:210 , GOL B:308 , HOH B:401	binding site for residue GOL B 307
5	AC5	SOFTWARE	MET B:168 , ARG B:170 , ASP B:171 , TYR B:175 , GOL B:307 , HOH B:401 , HOH B:403 , HOH B:552 , HOH B:568 , HOH B:610	binding site for residue GOL B 308
6	AC6	SOFTWARE	HIS B:162 , THR B:181	binding site for residue CL B 309
7	AC7	SOFTWARE	GLN B:116 , HIS B:129	binding site for residue CL B 310
8	AC8	SOFTWARE	ARG A:101 , SER A:187 , TYR A:188 , TYR A:189 , LEU A:190 , THR A:191 , HOH A:413 , HOH A:424 , HOH A:438 , HOH A:456 , HOH A:471 , HOH A:473 , HOH A:475 , HOH A:564 , HOH A:578 , HOH A:585	binding site for Poly-Saccharide residues A2G A 301 through FUC A 303
9	AC9	SOFTWARE	GLN A:70 , ARG A:101 , SER A:187 , TYR A:188 , TYR A:189 , LEU A:190 , THR A:191 , HOH A:413 , HOH A:424 , HOH A:438 , HOH A:456 , HOH A:471 , HOH A:473 , HOH A:475 , HOH A:564 , HOH A:578 , HOH A:585 , ARG B:101 , SER B:187 , TYR B:188 , TYR B:189 , LEU B:190 , THR B:191 , A2G B:304 , GAL B:305 , FUC B:306 , HOH B:405 , HOH B:412 , HOH B:417 , HOH B:421 , HOH B:439 , HOH B:486 , HOH B:491 , HOH B:502 , HOH B:509 , HOH B:510 , HOH B:548 , HOH B:573	binding site for Poly-Saccharide residues A2G B 301 through FUC B 303

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee....eeeeee....eeeeeee.....eeeeeee...eeeeeeeeee..eeeeeeeee.....eeeeeeee.......eeeeeeee....eeeeee..eeeeeeee....eeeeeee......eeee..eeeeee..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cb7 A  65 LDGPYQPTSLNLPVDYWMLIAPTREGKVAEGTNTTDRWFACVLVEPNVQNTQRQYVLDGQNVQLHVSNDSSTSWKFILFIKLTPDGTYTQYSTLSTPHKLCAWMKRDNRVYWYQGATPNASESYYLTINNDNSNVSSDAEFYLIPQSQTAMCTQYINNGL 224
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Chain B from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eeee....eeeee.....eeeeeee.....eeeeeee...eeeeeeeeee..eeeeeeeee.....eeeeeeee.......eeeeeeee....eeeeee..eeeeeeee....eeeeeee......eeee...eeeee..hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cb7 B  65 LDGPYQPTSLNLPVDYWMLIAPTREGKVAEGTNTTDRWFACVLVEPNVQNTQRQYVLDGQNVQLHVSNDSSTSWKFILFIKLTPDGTYTQYSTLSTPHKLCAWMKRDNRVYWYQGATPNASESYYLTINNDNSNVSSDAEFYLIPQSQTAMCTQYINNGL 224
                                    74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Visualization

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
		A2G	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		GAL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Gly A:67 - Pro A:68	[ RasMol ]
		Gly B:67 - Pro B:68	[ RasMol ]
		Thr A:181 - Pro A:182	[ RasMol ]
		Thr B:181 - Pro B:182	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	5cb7
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 13)