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(-) Description

Title :  CRYSTAL STRUCTURE OF THE VICILIN FROM SOLANUM MELONGENA REVEALED EXISTENCE OF DIFFERENT ANIONIC LIGANDS IN STRUCTURALLY SIMILAR POCKETS
 
Authors :  A. Jain, A. Kumar, D. M. Salunke
Date :  29 Jun 15  (Deposition) - 06 Apr 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Solanaceae; Solanum Melongena; 7S Vicilin; Sm80. 1, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Jain, A. Kumar, D. M. Salunke
Crystal Structure Of The Vicilin From Solanum Melongena Reveals Existence Of Different Anionic Ligands In Structurally Similar Pockets
Sci Rep V. 6 23600 2016
PubMed-ID: 27004988  |  Reference-DOI: 10.1038/SREP23600

(-) Compounds

Molecule 1 - SM80.1 VICILIN
    Chains: A
    Organism Common: EGGPLANT
    Organism Scientific: SOLANUM MELONGENA
    Organism Taxid: 4111
    Tissue: SEED

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MG1Ligand/IonMAGNESIUM ION
3PCA1Ligand/IonPYROGLUTAMIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:25 , GLY A:28 , HOH A:671 , HOH A:688 , HOH A:737binding site for residue MG A 401
2AC2SOFTWAREPHE A:228 , TYR A:260 , ASN A:262 , ARG A:267 , LYS A:346binding site for residue ACT A 402
3AC3SOFTWAREPHE A:30 , HIS A:65 , CYS A:67 , ILE A:109 , ALA A:126 , VAL A:135 , HOH A:730binding site for residue PCA A 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CAD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Asn A:145 -Pro A:146

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CAD)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5CAD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh..eehhhhhee......eeeee.......hhhhhhhh.eeeeeeee...eeeeeeee.eeeeeeeee.eeeeeee....eeeeeee...eeee....eeeeee......eeeeeeeee........eee........hhhhhhhhhhhhhhhh.hhhhhhhhh.......eee.hhhhhhhhhh..........................eee..eeeeee....hhhhh...eeeeeeee...eeeeeeee...eeeeeeee.eeeeeeeehhhhh.....eeeeeee....eeee.....eeeeee....eeeeeeee......eee.....hhhhhhhhhhhhhhhh.hhhhhhhhhhh.....eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cad A   5 QQESNVPYLFKVVRFKSRFRASHGDFRILPKFVQRSQLLRGIEKFRVSVIELEPQSFMLPHHCDGEAIFVVVKGQGVIVIAEQDKNNSFNLQKGDVLRLHGGSTIFLLNADANEKFKVYVLAKSVNAPGEVQEYFSAGGQNPESFYRAFVVDILESAFNVKRDKIERLFSQQKAGAIISASGAQAAAKAGHASAAGGAAAAARVAGPFNLMKEVPEFGSAFGQFQEAAPQRHVQLRDLDAAVAFMNINSGGMVLPYYNSRSTRVVAVVEGNARFEMACPHLGAAVVHYAKVRGNLNVGDVLVIPAGHPITFVAVAGSDFRVVGFGIDAEHNKKNFLAGKQNIWRNIDREAKELSFDMPGAEVEEIFAKQILSYFVAGPA 392
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284  ||   303       313       323       333       343       353       363       373       383         
                                                                                                                                                                                                                                                                                                                    287|                                                                                               
                                                                                                                                                                                                                                                                                                                     297
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CAD)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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    Asn A:145 - Pro A:146   [ RasMol ]  
 

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