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(-) Description

Title :  CRYSTAL STRUCTURE OF MITOCHONDRIAL RHODOQUINOL-FUMARATE REDUCTASE FROM ASCARIS SUUM WITH UBIQUINONE-1
 
Authors :  S. Harada, T. Shiba, D. Sato, A. Yamamoto, M. Nagahama, A. Yone, D. K. Ina K. Sakamoto, M. Inoue, T. Honma, K. Kita
Date :  17 Jun 15  (Deposition) - 22 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Rhodoquinol-Fumarate Reductase, Complex Ii, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Harada, T. Shiba, D. Sato, A. Yamamoto, M. Nagahama, A. Yone, D. K. Inaoka, K. Sakamoto, M. Inoue, T. Honma, K. Kita
Structural Insights Into The Molecular Design Of Flutolanil Derivatives Targeted For Fumarate Respiration Of Parasite Mitochondria
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL
    Chains: A, E
    EC Number: 1.3.5.1
    Organism Common: PIG ROUNDWORM
    Organism Scientific: ASCARIS SUUM
    Organism Taxid: 6253
    Synonym: RHODOQUINOL-FUMARATE REDUCTASE FP SUBUNIT
 
Molecule 2 - SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR SUBUNIT, MITOCHONDRIAL
    Chains: B, F
    EC Number: 1.3.5.1
    Organism Common: PIG ROUNDWORM
    Organism Scientific: ASCARIS SUUM
    Organism Taxid: 6253
    Synonym: RHODOQUINOL-FUMARATE REDUCTASE IP SUBUNIT
 
Molecule 3 - CYTOCHROME B-LARGE SUBUNIT
    Chains: C, G
    Organism Common: PIG ROUNDWORM
    Organism Scientific: ASCARIS SUUM
    Organism Taxid: 6253
    Synonym: RHODOQUINOL-FUMARATE REDUCTASE CYBL SUBUNIT
 
Molecule 4 - SUCCINATE DEHYDROGENASE [UBIQUINONE] CYTOCHROME B SMALL SUBUNIT, MITOCHONDRIAL
    Chains: D, H
    Organism Common: PIG ROUNDWORM
    Organism Scientific: ASCARIS SUUM
    Organism Taxid: 6253
    Synonym: CYBS,CYTOCHROME B558 SMALL SUBUNIT,SUCCINATE-UBIQUINONE REDUCTASE MEMBRANE ANCHOR SUBUNIT

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 16)

Asymmetric Unit (8, 16)
No.NameCountTypeFull Name
1EPH2Ligand/IonL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE
2F3S2Ligand/IonFE3-S4 CLUSTER
3FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4FES2Ligand/IonFE2/S2 (INORGANIC) CLUSTER
5HEM2Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6MLI2Ligand/IonMALONATE ION
7SF42Ligand/IonIRON/SULFUR CLUSTER
8UQ12Ligand/IonUBIQUINONE-1
Biological Unit 1 (8, 8)
No.NameCountTypeFull Name
1EPH1Ligand/IonL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE
2F3S1Ligand/IonFE3-S4 CLUSTER
3FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
5HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6MLI1Ligand/IonMALONATE ION
7SF41Ligand/IonIRON/SULFUR CLUSTER
8UQ11Ligand/IonUBIQUINONE-1
Biological Unit 2 (8, 8)
No.NameCountTypeFull Name
1EPH1Ligand/IonL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE
2F3S1Ligand/IonFE3-S4 CLUSTER
3FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
4FES1Ligand/IonFE2/S2 (INORGANIC) CLUSTER
5HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
6MLI1Ligand/IonMALONATE ION
7SF41Ligand/IonIRON/SULFUR CLUSTER
8UQ11Ligand/IonUBIQUINONE-1

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:85 , PHE A:153 , HIS A:276 , LEU A:286 , THR A:288 , GLU A:289 , ARG A:320 , HIS A:387 , ARG A:432 , FAD A:702binding site for residue MLI A 701
02AC2SOFTWAREGLY A:48 , ALA A:49 , GLY A:50 , GLY A:51 , ALA A:52 , THR A:71 , LYS A:72 , MET A:73 , SER A:78 , HIS A:79 , THR A:80 , ALA A:83 , GLN A:84 , GLY A:85 , GLY A:86 , TYR A:199 , ALA A:201 , ALA A:235 , THR A:236 , GLY A:237 , THR A:247 , ASP A:255 , LEU A:286 , HIS A:387 , TYR A:388 , GLY A:420 , GLU A:421 , ARG A:432 , ALA A:435 , ASN A:436 , SER A:437 , LEU A:438 , MLI A:701binding site for residue FAD A 702
03AC3SOFTWARESER B:88 , CYS B:89 , GLY B:92 , CYS B:94 , GLY B:95 , CYS B:97 , CYS B:109binding site for residue FES B 301
04AC4SOFTWARECYS B:182 , CYS B:185 , ALA B:186 , CYS B:188 , CYS B:249 , PRO B:250binding site for residue SF4 B 302
05AC5SOFTWARECYS B:192 , TYR B:202 , CYS B:239 , HIS B:240 , THR B:241 , ILE B:242 , MET B:243 , ASN B:244 , CYS B:245 , ALA B:256binding site for residue F3S B 303
06AC6SOFTWAREHIS B:240 , HIS C:75 , ARG C:76 , GLY C:79 , MET C:82 , ALA C:83 , HIS C:131 , THR C:132 , GLY C:135 , ARG D:63 , ALA D:66 , MET D:69 , ILE D:73 , HIS D:95 , VAL D:96 , GLY D:99binding site for residue HEM C 201
07AC7SOFTWARETRP B:197 , ILE B:242 , LEU C:60 , TRP C:69 , SER C:72 , GLY C:73 , ARG C:76 , ASP D:106 , TYR D:107binding site for residue UQ1 C 202
08AC8SOFTWARETHR C:85 , LEU C:133 , VAL D:70 , ILE D:73 , ALA D:76 , TYR D:77 , HIS D:80 , LEU D:88 , PHE D:150 , GLU D:151 , TRP D:154binding site for residue EPH D 201
09AC9SOFTWAREGLY E:85 , PHE E:153 , HIS E:276 , LEU E:286 , THR E:288 , GLU E:289 , ARG E:320 , HIS E:387 , ARG E:432 , FAD E:702binding site for residue MLI E 701
10AD1SOFTWAREGLY E:48 , ALA E:49 , GLY E:50 , GLY E:51 , ALA E:52 , THR E:71 , LYS E:72 , MET E:73 , SER E:78 , HIS E:79 , THR E:80 , ALA E:82 , ALA E:83 , GLN E:84 , GLY E:85 , GLY E:86 , TYR E:199 , ALA E:201 , ALA E:235 , THR E:236 , GLY E:237 , THR E:247 , ASP E:255 , LEU E:286 , HIS E:387 , TYR E:388 , GLY E:420 , GLU E:421 , ARG E:432 , ALA E:435 , ASN E:436 , SER E:437 , LEU E:438 , MLI E:701binding site for residue FAD E 702
11AD2SOFTWARESER F:88 , CYS F:89 , CYS F:94 , GLY F:95 , CYS F:97 , CYS F:109binding site for residue FES F 301
12AD3SOFTWARECYS F:182 , CYS F:185 , CYS F:188 , CYS F:249binding site for residue SF4 F 302
13AD4SOFTWARECYS F:192 , TYR F:202 , CYS F:239 , HIS F:240 , MET F:243 , ASN F:244 , CYS F:245binding site for residue F3S F 303
14AD5SOFTWAREHIS F:240 , HIS G:75 , ARG G:76 , GLY G:79 , CYS G:80 , MET G:82 , ALA G:83 , HIS G:131 , THR G:132 , ARG H:63 , ALA H:66 , HIS H:95 , VAL H:96 , GLY H:99binding site for residue HEM G 201
15AD6SOFTWARETRP F:197 , ILE F:242 , TRP G:69 , SER G:72 , GLY G:73 , ARG G:76 , ASP H:106 , TYR H:107binding site for residue UQ1 G 202
16AD7SOFTWARETHR G:85 , VAL H:70 , ALA H:76 , TYR H:77 , PHE H:150 , GLU H:151 , TRP H:154binding site for residue EPH H 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C3J)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1His A:425 -Ser A:426
2His E:425 -Ser E:426

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C3J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C3J)

(-) Exons   (0, 0)

(no "Exon" information available for 5C3J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:616
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee..hhhhhhhhhhhhhh...eeeee..hhhhhhhhhh...ee.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.............ee.................ee....hhhhhhhhhhhhhhh....eeee.eeeeeeeee..eeeeeeeee.....eeeeeeeeeee....hhhhh..........hhhhhhhhhh...ee....eeeeeeee........hhhhhh..eee......hhhhhh..hhhhhhhhhhhhhhhhhhhh..........eeee....hhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeee...ee.....eeeeee...eeeeeeeeee....ee...........hhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhh....eehhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee.............................eeeeeee......eeeeeee..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j A  30 SNIAQYKVIDHAYDVVIIGAGGAGLRAAMGLGEAGFKTAVVTKMFPTRSHTTAAQGGINAALGSMNPDDWKWHFYDTVKGSDWLGDQNAMHYLTRNAVEAVTELENFGMPFSRTPEGKIYQRSFGGQSNNYGKGGVAKRTCCVADRTGHSMLHTLYGNSLRCHCTFFIEYFALDLLMDKGRCVGVIALCLEDGTIHRFRSKRTIVATGGYGRAYFSCTTAHMNTGDGTALATRAGIALEDLEFIQFHPTGIYGVGCLITEGSRGEGGFLVNSEGERFMERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEKDHIYLQLHHLPAEQLHQRLPGISETAKIFAGVDVTKEPIPVIPTVHYNMGGIPTNYKAQVIKYTKEGGDKIVPGLYACGECACHSVHGANRLGANSLLDAVVFGRACSINIKEELKPDEKIPELPEGAGEESIANLDAVRYANGDVPTAELRLTMQKTMQKHAGVFRRGDILAEGVKKMMDLFKELKRLKTTDRSLIWNSDLTESLELQNLMLNATQTIVAAENRKESRGAHARDDFPKREDEYDYSKPIEGQTKRPFEKHWRKHTLTKQDPRTGHITLDYRPVIDKTLDPAEVDWIPPIIRSY 645
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639      


Chain B from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..........eeeeeeee......hhhhhhhhhhhh...................eeee..eeee.hhh........eeeee......eee..ee.hhhhhhhhhhh...................hhhhhhhhh..........hhhhhhhhhhhh....hhhhhhhhhhhhh.....hhhhhhhh.............hhhhhhh....hhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j B  33 KRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTKMKTKPAPLPTPANF 282
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282


Chain C from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j C  34 EKTPIQVWGWDYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPRWERHKKATLPT 186
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183   


Chain D from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee......................hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j D  28 TSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL 156
                                    37        47        57        67        77        87        97       107       117       127       137       147         


Chain E from PDB  Type:PROTEIN  Length:616
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee..hhhhhhhhhhhhhhh..eeeee..hhhhhhhhhh...ee.........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.............ee.................ee....hhhhhhhhhhhhhhh...eeeee.eeeeeeeee..eeeeeeeee.....eeeeeeeeeee....hhhhh..........hhhhhhhhhh...ee....eeeeeeee........hhhhhh..eee......hhhhhh..hhhhhhhhhhhhhhhhhhhh..........eeee....hhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeee...ee.....eeeeee...eeeeeeeeee....ee...........hhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhh....eehhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhh..ee........hhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee......................hhhhh..eeeeeee......eeeeeee..................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j E  30 SNIAQYKVIDHAYDVVIIGAGGAGLRAAMGLGEAGFKTAVVTKMFPTRSHTTAAQGGINAALGSMNPDDWKWHFYDTVKGSDWLGDQNAMHYLTRNAVEAVTELENFGMPFSRTPEGKIYQRSFGGQSNNYGKGGVAKRTCCVADRTGHSMLHTLYGNSLRCHCTFFIEYFALDLLMDKGRCVGVIALCLEDGTIHRFRSKRTIVATGGYGRAYFSCTTAHMNTGDGTALATRAGIALEDLEFIQFHPTGIYGVGCLITEGSRGEGGFLVNSEGERFMERYAPKAKDLASRDVVSRAETIEIMEGRGVGPEKDHIYLQLHHLPAEQLHQRLPGISETAKIFAGVDVTKEPIPVIPTVHYNMGGIPTNYKAQVIKYTKEGGDKIVPGLYACGECACHSVHGANRLGANSLLDAVVFGRACSINIKEELKPDEKIPELPEGAGEESIANLDAVRYANGDVPTAELRLTMQKTMQKHAGVFRRGDILAEGVKKMMDLFKELKRLKTTDRSLIWNSDLTESLELQNLMLNATQTIVAAENRKESRGAHARDDFPKREDEYDYSKPIEGQTKRPFEKHWRKHTLTKQDPRTGHITLDYRPVIDKTLDPAEVDWIPPIIRSY 645
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639      


Chain F from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee..........eeeeeeee.hhh..hhhhhhhhhhhh...................eeee..eeee.hhh.........eeee......eee..ee.hhhhhhhhhh....................hhhhhh.............hhhhhhhhhhhh...hhhhhhhhhhhhhh.....hhhhhhhh.............hhhhhhh....hhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j F  33 KRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLACICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTKMKTKPAPLPTPANF 282
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282


Chain G from PDB  Type:PROTEIN  Length:153
                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j G  34 EKTPIQVWGWDYLMRQRALKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEFIRGLGIPWVILDTFKFIIAFPIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPRWERHKKATLPT 186
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183   


Chain H from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.....................hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c3j H  28 TSAAVTGAAPPQFDPIAAEKGFKPLHSHGTLFKIERYFAAAMVPLIPAAYFIHGREMDLCLALALTLHVHWGVWGVVNDYGRPFVLGDTLAAAVRVGAYIFTACLLAGLLYFNEHDVGLTRAFEMVWEL 156
                                    37        47        57        67        77        87        97       107       117       127       137       147
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C3J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C3J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C3J)

(-) Gene Ontology  (23, 47)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DHSD_ASCSU | P92507: 3vr8 3vr9 3vra 3vrb 4ysx 4ysy 4ysz 4yt0 4ytm 4ytn 5c2t
        P92506_ASCSU | P92506: 4ysx 4ysy 4ysz 4yt0 4ytm 4ytn 5c2t
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        F1LC27_ASCSU | F1LC27: 4ysx 4ysy 4ysz 4yt0 4ytm 4ytn 5c2t
        O44074_ASCSU | O44074: 3vr8 3vr9 3vra 3vrb 4ysx 4ysy 4ysz 4yt0 4ytm 4ytn 5c2t
        P92506_ASCSU | P92506: 3vr8 3vr9 3vra 3vrb
        U1LRQ3_ASCSU | U1LRQ3: 4ysx 4ysy 4ysz 4yt0 4ytm 4ytn 5c2t

(-) Related Entries Specified in the PDB File

5c2t