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(-) Description

Title :  THE STRUCTURE OF RPF2-RRS1 EXPLAINS ITS ROLE IN RIBOSOME BIOGENESIS
 
Authors :  S. Kharde, F. R. Calvino, A. Gumiero, K. Wild, I. Sinning
Date :  10 Jun 15  (Deposition) - 08 Jul 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ribosome Biogenesis, Brix Domain, Protein-Rna Interaction, 5S Rnp, Protein Complex, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kharde, F. R. Calvino, A. Gumiero, K. Wild, I. Sinning
The Structure Of Rpf2-Rrs1 Explains Its Role In Ribosome Biogenesis.
Nucleic Acids Res. V. 43 7083 2015
PubMed-ID: 26117542  |  Reference-DOI: 10.1093/NAR/GKV640

(-) Compounds

Molecule 1 - RPF2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ANIA_10200
    Organism Scientific: EMERICELLA NIDULANS FGSC A4
    Organism Taxid: 227321
 
Molecule 2 - RRS1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AN3745.2, ANIA_03745
    Organism Scientific: EMERICELLA NIDULANS FGSC A4
    Organism Taxid: 227321

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5BY8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BY8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr A:54 -Pro A:55

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BY8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BY8)

(-) Exons   (0, 0)

(no "Exon" information available for 5BY8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee...hhhhhhhhhhhhhhh...eeeeee..........hhhhhhhhhhh...eeeeee.......eeeeeeee..eeeeeeeeee.........................eeeee.hhhhh..hhhhhhhhhhhhhhhh.....eee.hhh.eeeeeee.........eeeeeeeeeeee.......eeeeeeeeeeeeeeeeeee..hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5by8 A  23 LIEGAKRVLLLHGSKCPTPLHTVLKVFHSLTTPHSVLFHKKNENIHPFESTESLEFLANKNDCGmVIFGSSNKKRPNCLTIARIFDSKVLDmAELLLLPDANGEGIPEmNRLSmHVAIGLRPLmLFSGSAWDDTTSTTHTmLKSmLVDLFKGETSDKIDVEGLQYALmVGAEEPTAGLAPIIHLRWYKIVTKRSGHKLPRVELEEIGPKLDFKVGRIQEAPRDVmKEAmKQ 253
                                    32        42        52        62        72        82    |   92       102       112 |     122       132   |   142   |   152       162|   |  172       182       192       202       212       222       232       242    |  252 
                                                                                           87-MSE                    114-MSE          131-MSE|       146-MSE          163-MSE                    190-MSE                                                  247-MSE  
                                                                                                                                           136-MSE                        167-MSE                                                                             251-MSE


Chain B from PDB  Type:PROTEIN  Length:85
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeehhh.eeee..........hhhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 5by8 B  18 RLPITVSKPTPYTFDLGHLLANDPNPLELPKSEPLNASLKATARDGVQSLLNQLLTTCPITSSQQGVLLTLPAPSTILPRHKPLP 102
                                    27        37        47        57        67        77        87        97
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BY8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BY8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BY8)

(-) Gene Ontology  (18, 25)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Thr A:54 - Pro A:55   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C8VMF9_EMENI | C8VMF9: 4xd9
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(-) Related Entries Specified in the PDB File

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