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(-) Description

Title :  EIF4E COMPLEX
 
Authors :  N. Sekiyama, H. Arthanari, E. Papdopoulos, R. A. Rodriguez-Mias, G. Wa M. Leger-Abraham
Date :  09 Jun 15  (Deposition) - 15 Jul 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Complex, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Sekiyama, H. Arthanari, E. Papadopoulos, R. A. Rodriguez-Mias, G. Wagner, M. Leger-Abraham
Molecular Mechanism Of The Dual Activity Of 4Egi-1: Dissociating Eif4G From Eif4E But Stabilizing The Binding O Unphosphorylated 4E-Bp1.
Proc. Natl. Acad. Sci. Usa V. 112 E4036 2015
PubMed-ID: 26170285  |  Reference-DOI: 10.1073/PNAS.1512118112

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 33-217
    Gene: EIF4E
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: MRNA CAP-BINDING PROTEIN,EIF-4F 25 KDA SUBUNIT
 
Molecule 2 - EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN 1
    Chains: B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 50-84
    Gene: EIF4EBP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: EIF4E-BINDING PROTEIN 1,PHOSPHORYLATED HEAT- AND ACID-STABLE PROTEIN REGULATED BY INSULIN 1,PHAS-I

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1MGP2Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1MGP1Ligand/Ion7-METHYL-GUANOSINE-5'-TRIPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:56 , MET A:101 , TRP A:102 , GLU A:103 , ARG A:157 , LYS A:162 , HOH A:410 , HOH A:417 , HOH A:427 , HOH A:430 , HOH A:442 , HOH A:451 , HOH A:453binding site for residue MGP A 301
2AC2SOFTWARETRP C:56 , GLN C:57 , MET C:101 , TRP C:102 , GLU C:103 , ARG C:157 , LYS C:162 , HOH C:406 , HOH C:410 , HOH C:411 , HOH C:413 , HOH C:420 , HOH C:465binding site for residue MGP C 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BXV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BXV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BXV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BXV)

(-) Exons   (0, 0)

(no "Exon" information available for 5BXV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:174
                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeeeeee.......hhh.eeeeeeeeehhhhhhhhh...hhhhh....eeeeee...............eeeeee.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeeeee......eeeeee....hhhhhhhhhhhhhhhhh.......eeeehhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5bxv A  33 HYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATK 206
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202    


Chain B from PDB  Type:PROTEIN  Length:35
                                                                   
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                 5bxv B  50 TRIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTSP  84
                                    59        69        79     


Chain C from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee.......hhh.eeeeeeeeehhhhhhhhh...hhhhh....eeeeee...............eeeeee...hhhhhhhhhhhhhhhhhhhh..hhhhhh.eeeeeee......eeeeee....hhhhhhhhhhhhhhhhh......eeeeehhhhhh.....eee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bxv C  33 HYIKHPLQNRWALWFFKNDKSKTWQANLRLISKFDTVEDFWALYNHIQLSSNLMPGCDYSLFKDGIEPMWEDEKNKRGGRWLITLNKQQRRSDLDRFWLETLLCLIGESFDDYSDDVCGAVVNVRAKGDKIAIWTTECENRDAVTHIGRVYKERLGLPPKIVIGYQSHADTATTTKNRFVV 217
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202  ||   216 
                                                                                                                                                                                                      205|       
                                                                                                                                                                                                       210       


Chain D from PDB  Type:PROTEIN  Length:33
                                                                 
               SCOP domains --------------------------------- SCOP domains
               CATH domains --------------------------------- CATH domains
               Pfam domains --------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) --------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------- PROSITE
                 Transcript --------------------------------- Transcript
                 5bxv D  51 RIIYDRKFLMECRNSPVTKTPPRDLPTIPGVTS  83
                                    60        70        80
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BXV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BXV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BXV)

(-) Gene Ontology  (41, 49)

Asymmetric Unit(hide GO term definitions)

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  4EBP1_HUMAN | Q13541
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  IF4E_MOUSE | P63073
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        4EBP1_HUMAN | Q13541: 1ej4 1ejh 1wkw 2jgb 2jgc 2v8w 2v8x 2v8y 3hxg 3hxi 3m93 3m94 3u7x 4ued 5ekv
        IF4E_MOUSE | P63073: 1ej1 1ej4 1ejh 1l8b 5j5o 5j5y

(-) Related Entries Specified in the PDB File

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