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(-) Description

Title :  CRYSTAL STRUCTURE OF THE HLTF HIRAN DOMAIN WITH A SSDNA FRAGMENT
 
Authors :  D. Neculai, J. R. Walker, J. Weigelt, C. Bountra, A. M. Edwards, C. H. Arr S. Dhe-Paganon
Date :  26 May 15  (Deposition) - 25 May 16  (Release) - 25 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Dna Damage, Dna Recognition, Dna Binding Domain, Dna Binding Protein- Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Neculai, J. R. Walker, J. Weigelt, C. Bountra, A. M. Edwards, C. H. Arrowsmith, S. Dhe-Paganon
Co-Crystal Structure Of The Hltf Hiran Domain With A Ssdna Fragment
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA (5'-D(*(GD)P*GP*TP*G)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 2 - DNA (5'-D(*(TD)P*TP*G)-3')
    Chains: C
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 3 - HELICASE-LIKE TRANSCRIPTION FACTOR
    Chains: A, D
    EC Number: 3.6.4.-, 6.3.2.-
    Engineered: YES
    Expression System: ENTEROBACTERIA PHAGE L1
    Expression System Taxid: 268588
    Fragment: UNP RESIDUES 55-175
    Gene: HLTF
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNA-BINDING PROTEIN/PLASMINOGEN ACTIVATOR INHIBITOR 1 REGULATOR,HIP116,RING FINGER PROTEIN 80,SWI/SNF-RELATED MATRIX- ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A MEMBER 3,SUCROSE NONFERMENTING PROTEIN 2-LIKE 3

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2NA2Ligand/IonSODIUM ION
3PO42Ligand/IonPHOSPHATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:70 , TYR A:73 , HOH A:335 , HOH A:365 , HOH A:370 , HOH A:373binding site for residue NA A 201
2AC2SOFTWAREHIS A:66 , GLN A:107 , PO4 A:203 , HOH A:331binding site for residue NA A 202
3AC3SOFTWAREGLY A:65 , HIS A:66 , GLY A:105 , ASN A:106 , GLN A:107 , NA A:202 , HOH A:301 , HOH A:303 , HOH A:326binding site for residue PO4 A 203
4AC4SOFTWAREARG A:64 , HIS A:147 , HOH A:307 , DT B:2 , DG B:3binding site for residue PO4 A 204
5AC5SOFTWAREASN D:140 , ALA D:141 , PHE D:142 , THR D:143binding site for residue ACT D 201
6AC6SOFTWAREASN D:79 , GLY D:137 , ALA D:138 , ASN D:139binding site for residue ACT D 202
7AC7SOFTWAREVAL A:76 , GLU A:81 , ASN A:104 , GLN D:163 , HIS D:167 , HOH D:301 , HOH D:302binding site for residue ACT D 203
8AC8SOFTWAREGLY D:65 , HIS D:66 , LYS D:112 , LYS D:158 , HOH D:312 , HOH D:337binding site for residue ACT D 204

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BNH)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:174 -Pro A:175
2Ala D:174 -Pro D:175

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5BNH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5BNH)

(-) Exons   (0, 0)

(no "Exon" information available for 5BNH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeehhhhh.......eeeeeee..........eeee.....eeeeehhhhhhhhhhhhhh...eeeeee.........eeeeeeeeehhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bnh A  53 GSVDSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAP 175
                                    62        72        82        92       102       112       122       132       142       152       162       172   


Chain B from PDB  Type:DNA  Length:3
                                   
                 5bnh B   1 GTG   3


Chain C from PDB  Type:DNA  Length:3
                                   
                 5bnh C   1 TTG   3


Chain D from PDB  Type:PROTEIN  Length:123
                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeehhhhh........eeeeee..........eeee.....eeeeehhhhhhhhhhhhhh...eeeee..........eeeeeeeeehhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 5bnh D  53 GSVDSVLFGSLRGHVVGLRYYTGVVNNNEMVALQRDPNNPYDKNAIKVNNVNGNQVGHLKKELAGALAYIMDNKLAQIEGVVPFGANNAFTMPLHMTFWGKEENRKAVSDQLKKHGFKLGPAP 175
                                    62        72        82        92       102       112       122       132       142       152       162       172
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BNH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BNH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BNH)

(-) Gene Ontology  (31, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:174 - Pro A:175   [ RasMol ]  
    Ala D:174 - Pro D:175   [ RasMol ]  
 

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  5bnh
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HLTF_HUMAN | Q14527: 2mzn 4hre 4hrh 4s0n 4xzf 4xzg 5k5f

(-) Related Entries Specified in the PDB File

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