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(-) Description

Title :  CRYSTAL STRUCTURE OF THE N-TERMINAL RRM DOMAIN FROM MEC-8
 
Authors :  H. Soufari, C. D. Mackereth
Date :  22 Oct 16  (Deposition) - 11 Jan 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Alternative Splicing, Mrna, Rna-Binding Protein, Splicing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Soufari, C. D. Mackereth
Conserved Binding Of Gcac Motifs By Mec-8, Couch Potato, An The Rbpms Protein Family.
Rna V. 23 308 2017
PubMed-ID: 28003515  |  Reference-DOI: 10.1261/RNA.059733.116

(-) Compounds

Molecule 1 - MEC-8 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET-HIS1A
    Expression System Taxid: 511693
    Expression System Variant: LYSY
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL RRM RESIDUES 28-117
    Gene: MEC-8, CELE_F46A9.6, F46A9.6
    Mutation: YES
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1NH43Ligand/IonAMMONIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1NH44Ligand/IonAMMONIUM ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1NH42Ligand/IonAMMONIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:107binding site for residue NH4 A 201
2AC2SOFTWAREARG A:97binding site for residue NH4 A 202
3AC3SOFTWAREARG B:90 , HOH B:303binding site for residue NH4 B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5BJR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5BJR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 5BJR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhhh....eeeeeee..ee..ee...eeeeee.hhhhhhhhhhhhh............eeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 5bjr A  29 QVRTLFVSGLPMDAKPRELYLLFRGARGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPEAAQVLRLELAKSN 114
                                    38        48        58        68        78        88        98       108      


Chain B from PDB  Type:PROTEIN  Length:84
                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee......hhhhhhhhhh....eeeeeee..ee..ee...eeeeee.hhhhhhhhhhhhh............eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 5bjr B  29 QVRTLFVSGLPMDAKPRELYLLFRGARGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDARKMLQGVRFDPEAAQVLRLELAK 112
                                    38        48        58        68        78        88        98       108
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5BJR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5BJR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5BJR)

(-) Gene Ontology  (10, 10)

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        G5ECJ4_CAEEL | G5ECJ4: 5tkz

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