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(-) Description

Title :  CRYSTAL STRUCTURE OF OXIDIZED CHIMERIC ECAHPC1-186-YFSKHN
 
Authors :  N. Kamariah, M. F. Sek, B. Eisenhaber, F. Eisenhaber, G. Gruber
Date :  14 Jun 16  (Deposition) - 01 Feb 17  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  Alkylhydroperoxide Reductase, Ahpc, Peroxiredoxins, Chimeric, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Kamariah, M. F. Sek, B. Eisenhaber, F. Eisenhaber, G. Gruber
Transition Steps In Peroxide Reduction And A Molecular Switch For Peroxide Robustness Of Prokaryotic Peroxiredoxins.
Sci Rep V. 6 37610 2016
PubMed-ID: 27892488  |  Reference-DOI: 10.1038/SREP37610
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ALKYL HYDROPEROXIDE REDUCTASE SUBUNIT C,PEROXIREDOXIN-2
    Chains: A, B, C, D, E, F, G, H, I, J
    EC Number: 1.11.1.15
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET9D
    Expression System Strain: BL-21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 1-186,UNP RESIDUES 193-198
    Gene: AHPC, B0605, JW0598, PRDX2, NKEFB, TDPX1
    Organism Common: HUMAN
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12), HOMO SAPIENS
    Organism Taxid: 83333, 9606
    Other Details: THE FUSION PROTEIN OF E.COLI AHPC (RESIDUES 1-186) AND HUMAN PRX2 (RESIDUES 193-198)
    Strain: K12
    Synonym: ALKYL HYDROPEROXIDE REDUCTASE PROTEIN C22,PEROXIREDOXIN, SCRP-23,SULFATE STARVATION-INDUCED PROTEIN 8,SSI8,THIOREDOXIN PEROXIDASE,NATURAL KILLER CELL-ENHANCING FACTOR B,NKEF-B,PRP,THIOL- SPECIFIC ANTIOXIDANT PROTEIN,TSA,THIOREDOXIN PEROXIDASE 1, THIOREDOXIN-DEPENDENT PEROXIDE REDUCTASE 1

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit : ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 45)

Asymmetric/Biological Unit (2, 45)
No.NameCountTypeFull Name
1GOL22Ligand/IonGLYCEROL
2SO423Ligand/IonSULFATE ION

(-) Sites  (45, 45)

Asymmetric Unit (45, 45)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:40 , ARG A:112 , ARG A:120 , GLU A:139 , HOH A:315 , HOH A:322 , HOH A:325binding site for residue SO4 A 201
02AC2SOFTWAREPRO A:48 , SER A:86 , GLU A:87 , THR A:88 , HOH A:330binding site for residue SO4 A 202
03AC3SOFTWAREGLY A:19 , PHE A:21 , LYS A:80 , PHE F:45binding site for residue SO4 A 203
04AC4SOFTWARELYS A:7 , GLU A:26 , THR A:29 , GLU A:30 , PRO A:127 , GLN A:128 , GLY A:129 , HOH A:304binding site for residue GOL A 204
05AC5SOFTWARETYR A:39 , ALA A:41 , THR A:44 , VAL A:46 , CYS A:47 , PRO A:48 , LEU A:51 , ARG A:120binding site for residue GOL A 205
06AC6SOFTWARETYR B:39 , VAL B:46 , CYS B:47 , PRO B:48 , GLU B:50 , ARG B:120 , HOH B:312binding site for residue SO4 B 201
07AC7SOFTWARELYS B:17 , TYR B:58 , ASP B:67 , VAL B:68 , TYR B:69 , TYR B:94 , ALA B:95binding site for residue SO4 B 202
08AC8SOFTWAREPRO B:40 , ARG B:112 , ARG B:120 , GLU B:139 , GOL B:204binding site for residue SO4 B 203
09AC9SOFTWAREARG B:112 , GLU B:115 , LEU B:117 , SO4 B:203 , PHE C:77binding site for residue GOL B 204
10AD1SOFTWAREPHE B:11 , THR B:25 , GLU B:26binding site for residue GOL B 205
11AD2SOFTWAREPHE B:45 , GLY C:19 , PHE C:21 , LYS C:80binding site for residue SO4 C 201
12AD3SOFTWAREGLU D:20 , PHE D:21 , LYS D:80 , PHE E:45binding site for residue SO4 D 201
13AD4SOFTWARESER D:86 , GLU D:87 , THR D:88 , HOH D:315binding site for residue SO4 D 202
14AD5SOFTWARELYS D:17 , TYR D:58 , VAL D:68 , TYR D:69binding site for residue GOL D 203
15AD6SOFTWARECYS D:47 , GLY D:140binding site for residue GOL D 204
16AD7SOFTWAREALA D:41 , THR D:44 , VAL D:46 , CYS D:47 , PRO D:48 , LEU D:51 , ARG D:120binding site for residue GOL D 205
17AD8SOFTWARETYR E:39 , CYS E:47 , PRO E:48 , GLU E:50 , LEU E:51binding site for residue SO4 E 201
18AD9SOFTWARESER E:86 , THR E:88 , GOL E:206 , TRP J:170binding site for residue SO4 E 202
19AE1SOFTWAREPHE E:11 , THR E:25 , GLU E:26 , LYS E:27binding site for residue SO4 E 203
20AE2SOFTWAREARG E:150 , ASP J:53 , ASP J:144binding site for residue SO4 E 204
21AE3SOFTWAREPRO D:100 , THR D:101 , ARG D:106 , MET D:111 , GLY D:116 , HOH D:304 , PRO E:100 , THR E:101 , ARG E:106 , MET E:111binding site for residue GOL E 205
22AE4SOFTWARETHR E:44 , PHE E:45 , TRP E:82 , SO4 E:202binding site for residue GOL E 206
23AE5SOFTWARESER E:2 , PHE J:108 , ASP J:109binding site for residue GOL E 207
24AE6SOFTWAREPRO F:48 , SER F:86 , GLU F:87 , THR F:88binding site for residue SO4 F 201
25AE7SOFTWARETYR F:39 , PRO F:40 , CYS F:47 , GLU F:50 , LEU F:51 , ARG F:120 , HOH F:308binding site for residue SO4 F 202
26AE8SOFTWAREGLY F:19 , HOH F:312binding site for residue GOL F 203
27AE9SOFTWAREPRO G:48 , SER G:86 , GLU G:87 , THR G:88binding site for residue SO4 G 201
28AF1SOFTWARETHR G:6 , LYS G:7binding site for residue SO4 G 202
29AF2SOFTWAREGLN G:156 , ALA G:159 , SER G:160binding site for residue GOL G 203
30AF3SOFTWARELYS G:7 , GLU G:26 , THR G:29 , GLY G:129 , HOH G:314binding site for residue GOL G 204
31AF4SOFTWARETYR G:39 , ALA G:41 , THR G:44 , VAL G:46 , CYS G:47 , GLU G:50 , LEU G:51 , ARG G:120binding site for residue GOL G 205
32AF5SOFTWAREPRO H:48 , SER H:86 , GLU H:87 , THR H:88binding site for residue SO4 H 201
33AF6SOFTWARETYR H:39 , CYS H:47 , PRO H:48 , GLU H:50 , LEU H:51 , ARG H:120binding site for residue SO4 H 202
34AF7SOFTWAREILE H:134 , HOH H:302 , SER I:2 , LEU I:3binding site for residue GOL H 203
35AF8SOFTWAREILE H:8 , THR H:29 , GLU H:30 , GLY H:129binding site for residue GOL H 204
36AF9SOFTWARETYR I:39 , CYS I:47 , PRO I:48 , GLU I:50 , LEU I:51 , ARG I:120binding site for residue SO4 I 201
37AG1SOFTWAREPHE I:21 , LYS I:80 , HOH I:309 , PHE J:45binding site for residue SO4 I 202
38AG2SOFTWARESER J:86 , GLU J:87 , THR J:88 , GOL J:205binding site for residue SO4 J 201
39AG3SOFTWAREVAL J:46 , CYS J:47 , ARG J:120 , GLY J:140 , ILE J:141 , GLY J:142binding site for residue SO4 J 202
40AG4SOFTWARETHR J:44 , VAL J:46 , CYS J:47 , PRO J:48 , GLU J:50 , LEU J:51 , TRP J:82 , ARG J:120binding site for residue GOL J 203
41AG5SOFTWAREASP I:114 , LYS J:12 , GLN J:14 , GLU J:23binding site for residue GOL J 204
42AG6SOFTWARETHR J:44 , TRP J:82 , SO4 J:201binding site for residue GOL J 205
43AG7SOFTWARESER J:84 , SER J:85 , GLU J:87binding site for residue GOL J 206
44AG8SOFTWAREPHE I:77 , PRO J:40 , VAL J:46 , ARG J:112 , LEU J:117 , GLU J:139binding site for residue GOL J 207
45AG9SOFTWAREPHE J:11 , LYS J:12 , GLU J:26 , LYS J:27binding site for residue GOL J 208

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:47 -B:166
2A:166 -B:47
3E:47 -J:166
4F:47 -G:166
5H:166 -I:47

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5B8A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5B8A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5B8A)

(-) Exons   (0, 0)

(no "Exon" information available for 5B8A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeeee..eeeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5b8a A   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPA 168
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160        


Chain B from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeeehhhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8a B   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVC 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      


Chain C from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..eeeeeehhhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh...........eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8a C   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPG 163
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160   


Chain D from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeee....eeeeehhhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5b8a D   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHP 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain E from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..eeeeeehhhhh..eeeeee.........hhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhhh.hhhhh..eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8a E   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGE 164
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    


Chain F from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..eeeeee.hhh...eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8a F   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEV 165
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160     


Chain G from PDB  Type:PROTEIN  Length:171
                                                                                                                                                                                                           
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..eeeeeehhhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh...........eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8a G   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWK 171
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 


Chain H from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee....eeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8a H   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKWKEGEATL 177
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       


Chain I from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........eeeee....eeeee.hhh...eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhhhhhhh...eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5b8a I   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHP 162
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160  


Chain J from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee..eeeeee.hhhh..eeeeee.........hhhhhhhhhhhhhhhhh.eeeeeee..hhhhhhhhhhhh.hhhhh..eeee...hhhhhhh..ee....ee.eeeeee.....eeeeeee......hhhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5b8a J   1 MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVASHPGEVCPAKW 170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5B8A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5B8A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5B8A)

(-) Gene Ontology  (28, 36)

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  5b8a
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    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
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  AHPC_ECOLI | P0AE08
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  PRDX2_HUMAN | P32119
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
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  1.11.1.15
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    Interatomic Contacts of Structural Units: CSU
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  AHPC_ECOLI | P0AE08
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    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AHPC_ECOLI | P0AE08: 5b8b
        PRDX2_HUMAN | P32119: 1qmv 5b8b

(-) Related Entries Specified in the PDB File

5b8b