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(-) Description

Title :  CRYSTAL STRUCTURE OF THG1 LIKE PROTEIN (TLP) WITH GTP
 
Authors :  S. Kimura, T. Suzuki, J. Yu, K. Kato, M. Yao
Date :  31 Jul 15  (Deposition) - 03 Aug 16  (Release) - 03 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Kimura, T. Suzuki, M. Chen, K. Kato, J. Yu, A. Nakamura, I. Tanaka, M. Yao
Template-Dependent Nucleotide Addition In The Reverse (3'-5') Direction By Thg1-Like Protein
Sci Adv V. 2 01397 2016
PubMed-ID: 27051866  |  Reference-DOI: 10.1126/SCIADV.1501397

(-) Compounds

Molecule 1 - TRNA(HIS)-5'-GUANYLYLTRANSFERASE (THG1) LIKE PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PET26B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: METHANOSARCINA ACETIVORANS
    Organism Taxid: 2214

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1GTP2Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
2MG4Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1GTP4Ligand/IonGUANOSINE-5'-TRIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:21 , GLY A:22 , ASN A:24 , PHE A:25 , LYS A:26 , LEU A:29 , GLU A:35 , LYS A:36 , PRO A:37 , ASP A:39 , PHE A:42 , SER A:68 , ASP A:69 , MG A:302 , MG A:303binding site for residue GTP A 301
2AC2SOFTWAREASP A:21 , GLY A:22 , ASP A:69 , GTP A:301 , MG A:303binding site for residue MG A 302
3AC3SOFTWAREASP A:21 , ASP A:69 , GTP A:301 , MG A:302 , HOH A:401 , HOH A:402binding site for residue MG A 303
4AC4SOFTWAREASP B:21 , GLY B:22 , ARG B:23 , ASN B:24 , PHE B:25 , GLU B:35 , PRO B:37 , ASP B:39 , PHE B:42 , SER B:68 , ASP B:69 , MG B:302 , MG B:303 , HOH B:401binding site for residue GTP B 301
5AC5SOFTWAREASP B:21 , GLY B:22 , ASP B:69 , GTP B:301binding site for residue MG B 302
6AC6SOFTWAREASP B:21 , ASP B:69 , GTP B:301 , HOH B:401 , HOH B:402binding site for residue MG B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AXL)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Pro A:14 -Pro A:15
2Lys A:36 -Pro A:37
3Pro B:14 -Pro B:15
4Lys B:36 -Pro B:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AXL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AXL)

(-) Exons   (0, 0)

(no "Exon" information available for 5AXL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh......eeeeeee.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh.....eeeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhheeeeee..eeeee.........hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5axl A   3 TREIYAEMRCIPPVVLRADGRNFKNTLSGLGFEKPYDKTFARAMADTAELFIKKSGLSPLFAYTFSDEISFLFTDLPFDGRVEKIDSVVASFLGSALTIKLRLEEPIAFDSRLVALQKEEIPEYFHRRQLEAWRNFVASWGYYALRNEGMGRNEAAKYLKRKKESEIHEMLFERGINLATLPSWQRRGVIISKEARKITQNWEIPKFKSEKGIPFLEKLIN 241
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    || 220       230       240 
                                                                                                                                                                                                                            197|                         
                                                                                                                                                                                                                             216                         


Chain B from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh......eeeeeee.hhhhhhhh.......hhhhhhhhhhhhhhhhhhh.....eeeee..eeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhheeeeee..eeeee.........hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5axl B   3 TREIYAEMRCIPPVVLRADGRNFKNTLSGLGFEKPYDKTFARAMADTAELFIKKSGLSPLFAYTFSDEISFLFTDLPFDGRVEKIDSVVASFLGSALTIKLRLEEPIAFDSRLVALQKEEIPEYFHRRQLEAWRNFVASWGYYALRNEGMGRNEAAKYLKRKKESEIHEMLFERGINLATLPSWQRRGVIISKEARKITQNWEIPKFKSEKGIPFLEKLIN 241
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192    || 220       230       240 
                                                                                                                                                                                                                            197|                         
                                                                                                                                                                                                                             216
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AXL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AXL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AXL)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5AXL)

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 Related Entries

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UniProtKB/TrEMBL
        A0A1C7D1G9_9 | A0A1C7D1G9: 5axk 5axm 5axn

(-) Related Entries Specified in the PDB File

5axk 5axm 5axn