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(-) Description

Title :  PRECISE RESTING STATE OF THERMUS THERMOPHILUS SECYEG
 
Authors :  Y. Tanaka, Y. Sugano, M. Takemoto, T. Kusakizako, K. Kumazaki, R. Ishit O. Nureki, T. Tsukazaki
Date :  10 Jul 15  (Deposition) - 25 Nov 15  (Release) - 16 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.72
Chains :  Asym./Biol. Unit :  E,G,Y
Keywords :  Translocon, Membrane Protein, Protein Transport-Immune System Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tanaka, Y. Sugano, M. Takemoto, T. Mori, A. Furukawa, T. Kusakizako K. Kumazaki, A. Kashima, R. Ishitani, Y. Sugita, O. Nureki, T. Tsukazaki
Crystal Structures Of Secyeg In Lipidic Cubic Phase Elucidate A Precise Resting And A Peptide-Bound State.
Cell Rep V. 13 1561 2015
PubMed-ID: 26586438  |  Reference-DOI: 10.1016/J.CELREP.2015.10.025

(-) Compounds

Molecule 1 - PROTEIN TRANSLOCASE SUBUNIT SECY
    Chains: Y
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Gene: SECY, TTHA1672
    Mutation: YES
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / DSM 579)
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
 
Molecule 2 - PROTEIN TRANSLOCASE SUBUNIT SECE
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Gene: SECE, TTHA0249
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / DSM 579)
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
 
Molecule 3 - PUTATIVE PREPROTEIN TRANSLOCASE, SECG SUBUNIT
    Chains: G
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21-GOLD(DE3)PLYSS AG
    Expression System Taxid: 866768
    Fragment: UNP RESIDUES 43-116
    Gene: TTHA1784
    Organism Scientific: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / DSM 579)
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : EGY

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 11)

Asymmetric/Biological Unit (1, 11)
No.NameCountTypeFull Name
1OLC11Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP G:2 , ASN Y:294 , LEU Y:297 , OLC Y:506binding site for residue OLC Y 501
02AC2SOFTWAREPRO Y:151 , PHE Y:291 , ASP Y:293 , ASN Y:294 , LEU Y:297 , OLC Y:503 , OLC Y:506binding site for residue OLC Y 502
03AC3SOFTWARETHR Y:132 , OLC Y:502binding site for residue OLC Y 503
04AC4SOFTWARETRP E:21 , MET G:1 , TRP Y:370 , PHE Y:374 , LEU Y:377binding site for residue OLC Y 504
05AC5SOFTWAREOLC G:103 , OLC Y:507binding site for residue OLC Y 505
06AC6SOFTWARETYR G:5 , TRP G:73 , PRO G:74 , OLC G:101 , GLY Y:146 , SER Y:148 , PHE Y:152 , PHE Y:155 , OLC Y:501 , OLC Y:502binding site for residue OLC Y 506
07AC7SOFTWAREOLC G:103 , PRO Y:309 , SER Y:310 , LEU Y:312 , PHE Y:313 , LEU Y:380 , ILE Y:384 , OLC Y:505binding site for residue OLC Y 507
08AC8SOFTWARETYR G:5 , LEU G:10 , LEU G:13 , OLC Y:506binding site for residue OLC G 101
09AC9SOFTWARETYR G:53 , LEU Y:23 , ALA Y:27 , ILE Y:34binding site for residue OLC G 102
10AD1SOFTWAREARG G:54 , VAL G:62 , ASN Y:387 , OLC Y:505 , OLC Y:507binding site for residue OLC G 103

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AWW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AWW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AWW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AWW)

(-) Exons   (0, 0)

(no "Exon" information available for 5AWW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain E from PDB  Type:PROTEIN  Length:60
                                                                                            
               SCOP domains ------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------ Transcript
                 5aww E   1 MFARLIRYFQEARAELARVTWPTREQVVEGTQAILLFTLAFMVILGLYDTVFRFLIGLLR  60
                                    10        20        30        40        50        60


Chain G from PDB  Type:PROTEIN  Length:75
                                                                                                           
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                 5aww G   1 MDLLYTLVILFYLGVAGLLVYLVLVQEPKQGAGDLMGGSADLFSARGVTGGLYRLTVILGVVFAALALVIGLWPR  75
                                    10        20        30        40        50        60        70     


Chain Y from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhh..hhhhhhhhhhh..hhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhheeeeeee...eee..eee...eeeeeee.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aww Y   1 MVKAFWSALQIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAIIMQILVTVVPALEKLSKEGEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIALLLWMAERITEYGIGNGTSLIIFAGIVVEWLPQILRTIGLIRTGEVNLVAFLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPFQDNPVLQGIANFFNPTRPSGLFIEVLLVILFTYVYTAVQFDPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLGLVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVESQLMLRSY 424
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AWW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AWW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AWW)

(-) Gene Ontology  (14, 27)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SECE_THET8 | P38383: 2zjs 2zqp 5ch4
        SECY_THET8 | Q5SHQ8: 2zjs 2zqp 5ch4
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(-) Related Entries Specified in the PDB File

5ch4