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(-) Description

Title :  DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY
 
Authors :  A. Batyuk, Y. Wu, A. Honegger, M. Heberling, A. Plueckthun
Date :  21 Sep 15  (Deposition) - 23 Mar 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym./Biol. Unit :  A
Keywords :  Chaperone, Crystallization Chaperone, Designed Ankyrin Repeat Protein ( Darpin), Rigid Domain Fusion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Batyuk, Y. Wu, A. Honegger, M. Heberling, A. Plueckthun
Darpin-Based Crystallization Chaperones Exploit Molecular Geometry As A Screening Dimension In Protein Crystallography
J. Mol. Biol. V. 428 1574 2016
PubMed-ID: 26975886  |  Reference-DOI: 10.1016/J.JMB.2016.03.002

(-) Compounds

Molecule 1 - OFF7_DB12V4
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: K-12
    Expression System Taxid: 83333
    Expression System Variant: XL1-BLUE
    Expression System Vector Type: PLASMID
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2SCN3Ligand/IonTHIOCYANATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:100 , LYS A:101 , ASN A:102 , HIS A:135 , GLU A:201 , HOH A:2057 , HOH A:2077 , HOH A:2289BINDING SITE FOR RESIDUE EPE A1427
2AC2SOFTWARELEU A:119 , LYS A:122 , TRP A:123BINDING SITE FOR RESIDUE SCN A1430
3AC3SOFTWAREGLU A:61 , SER A:208 , SER A:268 , VAL A:354 , LYS A:372 , SER A:373 , GLY A:374 , ALA A:375 , ARG A:381BINDING SITE FOR RESIDUE EPE A1431

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AQ8)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:304 -Pro A:305

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AQ8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AQ8)

(-) Exons   (0, 0)

(no "Exon" information available for 5AQ8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:416
                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.eeeeeeee.....eeeee.....ee.hhhhhhhhhhhhhhhhhh.......ee..hhhhh.....hhhhh....eehhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhhhh..........hhhhh........eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhh......hhhhh.....eeeeeeeee...eeeeeeeee......eeeeeeee....hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aq8 A  11 GSDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTPFDLAIDNGNEDAAGVLLTAAKVKDAADQLGARVGYIELDLNSGKILASFRSEERFPMMSTFKVLLAGAILSRIDAGQEQLGRRIHYSQNDLVEYSPVTEKHLTDGMTVRELASAAITMSDNTAANLLLTTIGGPKGLTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTTPVAMATTLRKLLTGELLTPASRQQLMDWMEADKVAGPLLRSVLPAGWFIADKSGAGERGSRGIVAALGPDGKPSRIVVIYTTGSQATMDELNRQIAEIGASLIKGW 426
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AQ8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AQ8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AQ8)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5AQ8)

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  Cis Peptide Bonds
    Glu A:304 - Pro A:305   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 5AQ8)

(-) Related Entries Specified in the PDB File

5aq7 DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY
5aq9 DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY
5aqa DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY
5aqb DARPIN-BASED CRYSTALLIZATION CHAPERONES EXPLOIT MOLECULAR GEOMETRY AS A SCREENING DIMENSION IN PROTEIN CRYSTALLOGRAPHY