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(-) Description

Title :  STRUCTURES OF COMPLEXES OF RHIZOPUSPEPSIN WITH PEPSTATIN AND OTHER STATINE-CONTAINING INHIBITORS
 
Authors :  K. Suguna, D. R. Davies
Date :  03 Aug 89  (Deposition) - 15 Apr 91  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  E,I
Keywords :  Acid Proteinase, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Suguna, E. A. Padlan, R. Bott, J. Boger, K. D. Parris, D. R. Davies
Structures Of Complexes Of Rhizopuspepsin With Pepstatin An Other Statine-Containing Inhibitors.
Proteins V. 13 195 1992
PubMed-ID: 1603809  |  Reference-DOI: 10.1002/PROT.340130303
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RHIZOPUSPEPSIN
    Chains: E
    EC Number: 3.4.23.6
    Engineered: YES
    Organism Common: BREAD MOLD
    Organism Scientific: RHIZOPUS CHINENSIS
    Organism Taxid: 4843
 
Molecule 2 - PEPSTATIN-LIKE RENIN INHIBITOR
    Chains: I
    Engineered: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : EI

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2DHL1Mod. Amino Acid2-AMINO-ETHANETHIOL
3STA1Mod. Amino AcidSTATINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY E:220 , HOH E:525 , HOH E:718 , PHE I:4 , CYS I:5 , STA I:6BINDING SITE FOR RESIDUE CA I 400
2AC2SOFTWAREILE E:15 , GLU E:16 , ASP E:35 , GLY E:37 , TYR E:77 , GLY E:78 , ASP E:79 , SER E:81 , TRP E:194 , ASP E:218 , GLY E:220 , THR E:221 , THR E:222 , TRP E:294 , ILE E:298 , HOH E:507 , HOH E:525 , HOH E:560 , HOH E:752 , CA I:400 , HOH I:671BINDING SITE FOR CHAIN I OF PEPSTATIN-LIKE RENIN INHIBITOR
3CATAUTHORASP E:35 , ASP E:218CATALYTICALLY ACTIVE RESIDUES

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1E:48 -E:51
2E:252 -E:285

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Thr E:25 -Pro E:26
2Val E:315 -Pro E:316

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5APR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5APR)

(-) Exons   (0, 0)

(no "Exon" information available for 5APR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain E from PDB  Type:PROTEIN  Length:325
                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d5apre_ E: Acid protease                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains -----5aprE01 E:6-174 Acid Proteases                                                                                                                                           5aprE02 E:175-323 Acid Proteases                                                                                                                     -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee....eeeeeeeee...eeeeeeee....eeeee...............hhh....ee..eeeeee.....eeeeeeeeeeeee..eeee.eeeeeeeeeehhhh.....eeee...hhh........hhhhhhh.......eeeeee..hhh...eeeee....hhh.....eeee........eeee.eeee..eeee..eeeee......eeee.hhhhhhhhh...eee...eeee.........eeeee..eeeee.hhhh..eee..eeee.eeee..eeeeeehhhh..eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5apr E   1 AGVGTVPMTDYGNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAASFASGPNDGLLGLGFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTYTISCDTSAFKPLVFSINGASFQVSPDSLVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAPVAE 325
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320     


Chain I from PDB  Type:PROTEIN  Length:7
                                       
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
                 Transcript ------- Transcript
                 5apr I   3 PFCxLFx   9
                               |  |
                               6-STA
                                  9-DHL
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5APR)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CARP_RHICH | P06026: 1uh7 1uh8 1uh9 2apr 3apr 4apr 6apr

(-) Related Entries Specified in the PDB File

4apr 6apr