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(-) Description

Title :  GEOTRICHUM CANDIDUM CEL7A APO STRUCTURE AT 2.1A
 
Authors :  A. S. Borisova, J. Stahlberg
Date :  11 Mar 15  (Deposition) - 23 Sep 15  (Release) - 27 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Cellobiohydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Borisova, E. V. Eneyskaya, K. S. Bobrov, S. Jana, A. Logachev, D. E. Polev, A. L. Lapidus, F. M. Ibatullin, U. Saleem, M. Sandgren, C. M. Payne, A. A. Kulminskaya, J. Stahlberg
Sequencing, Biochemical Characterization, Crystal Structure And Molecular Dynamics Of Cellobiohydrolase Cel7A From Geotrichum Candidum 3C.
Febs J. V. 282 4515 2015
PubMed-ID: 26367132  |  Reference-DOI: 10.1111/FEBS.13509

(-) Compounds

Molecule 1 - CELLOBIOHYDROLASE I
    Chains: A
    EC Number: 3.2.1.176
    Fragment: CATALYTIC DOMAIN, RESIDUES 18-456
    Organism Scientific: GALACTOMYCES CANDIDUM
    Organism Taxid: 1173061
    Strain: 3C
    Synonym: CELLOBIOHYDROLASE CEL7A

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NAG4Ligand/IonN-ACETYL-D-GLUCOSAMINE
3PCA1Mod. Amino AcidPYROGLUTAMIC ACID
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:432 , PHE A:435 , SER A:436 , GLY A:437 , NAG A:705BINDING SITE FOR RESIDUE GOL A 801
2AC2SOFTWAREASN A:37 , TRP A:38 , ASN A:200 , SER A:201 , HOH A:2171 , HOH A:2176 , HOH A:2267BINDING SITE FOR RESIDUE GOL A 802
3AC3SOFTWAREGLY A:323 , ILE A:324 , SER A:325 , SER A:328 , THR A:330 , ASP A:332 , TYR A:333 , HOH A:2391BINDING SITE FOR RESIDUE PEG A 901
4AC4SOFTWAREVAL A:312 , THR A:438BINDING SITE FOR RESIDUE PEG A 902
5AC5SOFTWARETHR A:48 , ASN A:57 , HOH A:2080 , HOH A:2094 , HOH A:2466BINDING SITE FOR MONO-SACCHARIDE NAG A 704 BOUND TO ASN A 57
6AC6SOFTWAREASP A:64 , GLN A:190 , ASN A:206 , ASN A:239 , HOH A:2125 , HOH A:2465BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 701 THROUGH NAG A 702 BOUND TO ASN A 206
7AC7SOFTWAREPHE A:306 , ASN A:432 , GOL A:801 , HOH A:2467BINDING SITE FOR MONO-SACCHARIDE NAG A 705 BOUND TO ASN A 432

(-) SS Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1A:19 -A:25
2A:50 -A:71
3A:61 -A:67
4A:138 -A:402
5A:172 -A:210
6A:176 -A:209
7A:238 -A:243
8A:261 -A:334

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:386 -Pro A:387

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AMP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AMP)

(-) Exons   (0, 0)

(no "Exon" information available for 5AMP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:438
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee.........eeeeeee.....eeeeeeeeee.hhhh.eee.......ee..ee......hhhhhhhheee...hhhhhhheeee..eeeee.eee...eee.eeeeeeee..ee.ee....eeeeeeee........eeeeeee......hhhhh....hhhhhh.............ee..ee.....ee.......ee..eeee..eeeeeee....eeeeee.......eeee.hhhh.............................ee....ee....eeeeeeeee.....eeeeeeeeee..eeee..............hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhheeeeeeee......hhhhhh........................hhhhhhhhh...eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5amp A   1 xQIGTLTTETHPPLTWQTCTSGGSCTTNNGKVVLDANWRWLHSTSGSTNCYTGNTWNTTLCPDDTTCAQNCALDGADYEGTYGITASGNSLRLNFVTNGSQKNVGSRTYLMKDDTHYQTFNLLNQEFTFDVDVSGLPCGLNGALYMVPMAADGGVSNEPNNKAGAQYGVGYCDSQCPRDLKFIAGSANVQGWEPASNSANSGLGGNGSCCAELDIWEANSISAALTPHSADTVTQTVCNGDDCGGTYSNDRYSGTTDPDGCDFNSYRQGDTSFYGPGKTVDTNSKFTVVTQFLTDSSGNLNEIKRFYVQNGVVIPNSQSTIAGISGNSITQDYCTAQKQVFGDTNTWEDHGGFQSMTNAFKAGMVLVMSLWDDYYADMLWLDSVAYPTDADPSTPGVARGTCSTTSGVPSDIESSAASAYVIYSNIKVGPINSTFSGT 438
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                            |                                                                                                                                                                                                                                                                                                                                                                                                                                                     
                            1-PCA
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AMP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AMP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AMP)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5AMP)

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UniProtKB/TrEMBL
        A0A088T0J9_G | A0A088T0J9: 4zzt 4zzu 4zzv 4zzw

(-) Related Entries Specified in the PDB File

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