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(-) Description

Title :  CRYSTAL STRUCTURE OF NADR IN COMPLEX WITH 4-HYDROXYPHENYLACETATE
 
Authors :  A. Liguori, E. Malito, M. J. Bottomley
Date :  16 Feb 15  (Deposition) - 02 Mar 16  (Release) - 11 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cell Adhesion, Vaccine, Meningitis, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Liguori, E. Malito, P. Lo Surdo, L. Fagnocchi, F. Cantini, A. F. Haag, S. Brier, M. Pizza, I. Delany, M. J. Bottomley
Molecular Basis Of Ligand-Dependent Regulation Of Nadr, The Transcriptional Repressor Of Meningococcal Virulence Factor Nada.
Plos Pathog. V. 12 5557 2016
PubMed-ID: 27105075  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1005557

(-) Compounds

Molecule 1 - TRANSCRIPTIONAL REGULATOR, MARR FAMILY
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Taxid: 469008
    Expression System Variant: T1R
    Expression System Vector Type: PLASMID
    Organism Common: MENB
    Organism Scientific: NEISSERIA MENINGITIDIS SEROGROUP B
    Organism Taxid: 491
    Strain: MC58
    Synonym: NEISSERIAL ADHESIN A REGULATOR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
14HP1Ligand/Ion4-HYDROXYPHENYLACETATE
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:9 , ASN A:11 , HOH A:2003 , MSE B:22 , PHE B:25 , LEU B:29 , ASP B:36 , TRP B:39 , ARG B:43 , TYR B:115BINDING SITE FOR RESIDUE 4HP B1146

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AIP)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys B:84 -Pro B:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AIP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AIP)

(-) Exons   (0, 0)

(no "Exon" information available for 5AIP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhhhh..eeee.........eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5aip A   1 mPTQSKHASINIGLIQAREALmTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPSNDQRRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKmLLLKDLLAELAKIE 141
                            |       10        20 |      30        40        50        60        70        80        90       100       110       120      |130       140 
                            |                   22-MSE                                                                                                  127-MSE          
                            1-MSE                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.eehhhhhhhhh.hhhhhhhhhhhhhhh..eee.....eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5aip B   9 SINIGLIQAREALmTQFRPILNQANITDQQWRIIRLLAENGTLDFQDLANQACILRPSLTGILTRLEKAGLVVRLKPRVFLKLTAEGEKLYEEIGEEVDERYDAIEEVLGREKmLLLKDLLAELAKIEDALN 145
                                    18   |    28        38        48        58        68        78      ||93       103       113       123   |   133       143  
                                        22-MSE                                                         85|                                 127-MSE              
                                                                                                        91
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AIP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AIP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AIP)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q7DD70_NEIMB | Q7DD70: 5aiq

(-) Related Entries Specified in the PDB File

5aiq CRYSTAL STRUCTURE OF LIGAND-FREE NADR