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(-)Asym./Biol. Unit
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(-) Description

Title :  N-TERMINAL FRAGMENT OF DYNEIN HEAVY CHAIN
 
Authors :  L. Urnavicius, K. Zhang, A. G. Diamant, C. Motz, M. A. Schlager, M. Yu, N. C. V. Robinson, A. P. Carter
Date :  23 Jan 15  (Deposition) - 18 Feb 15  (Release) - 08 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  5.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Motor Protein, Dynein, Tail, Heavy Chain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Urnavicius, K. Zhang, A. G. Diamant, C. Motz, M. A. Schlager, M. Yu, N. A. Patel, C. V. Robinson, A. P. Carter
The Structure Of The Dynactin Complex And Its Interaction With Dynein.
Science V. 347 1441 2015
PubMed-ID: 25814576  |  Reference-DOI: 10.1126/SCIENCE.AAA4080

(-) Compounds

Molecule 1 - DYNEIN HEAVY CHAIN, CYTOPLASMIC
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL FRAGMENT OF TAIL DOMAIN, RESIDUES 1-557
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: POLYALANINE MODEL WITH SELENOMETHIONINES
    Synonym: DYN1, DYNEIN HEAVY CHAIN, CYTOSOLIC, DYHC

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5AFR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AFR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Lys A:146 -Ser A:147
2Ser B:215 -Mse B:216

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AFR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AFR)

(-) Exons   (0, 0)

(no "Exon" information available for 5AFR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:332
                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..eee...eee..hhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5afr A   8 LANELIEFVAATVTGIKNSPKENEQAFIDYLHCQYLERFQFFLGLFVFLFIVTIDIAIYDANLANSTLLIIKQISAIYNAGNLASIITHGVSSVFGQLIKSDIDKTRRKLDDISKQFQQLHTSIETPDLLAmVPSIIKLAVSKGATSHDYANYLPSNDLESmRFLNILQSIANKWFLVLKQTLFLDEVEFWSNFYEVLKSLIEQTQSQEFQVCLSVLTNAKRFHNLTNLLNEGSLSDKFKLADKYNQFLSSIPIDEDLQELFPVLASSLKKFRYSGYPVQRFVVLmDKISQEVmDAILSNLSYGSFLGLYEKSAGmIEEWDDIVQDVNLLIR 410
                                    17        27        37        47   ||   66|    || 85    ||  98 ||    126       136       146 ||    164       174       184 |     194       204       214 |     224       234  ||   254       264       274       284       294       304       314    || 332       342       352     | 362   |   372 ||    388     | 398       408  
                                                                      51|   66|   78|      90|   100|  119|                    148|                          186-MSE                       216-MSE              237|                                                                    319|                           358-MSE 366-MSE 374|          394-MSE            
                                                                       61    73    82       94    114   125                     157                                                                              248                                                                     328                                            381                             


Chain B from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhh.eeee....ee.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5afr B   7 RLANELIEFVAATVTGIKNSPKENEQAFIDYLHCQYLERFQFFLGLFVFLFIVTIDIAIYDANLANSTLLIIQISAIYNAGNLASIITHGVSSVFGQLIKSIDKTRRKLDDISKQFQQLHTSIETPDLLAmVPSIIKLAVSKGATSHDYANYLPSNDLESmRFLNILQSIANKWFLVLKQTFLDEVEFWSNFYEVLKSLIEQTQSQEFQVCLSVLTNAKRFHNLTNLLNEGSLSDKFKLADKYNQFLSSIPIDEDLQELFPVLASSLKKFRYSGYPVQRFVVLmDKISQEVmDAILSNLSYGSFLGLYEKSAGmIEEWDDIVQDVNLLIR 410
                                    16        26        36        46    ||  65||    ||84     || 97 ||    126       136       146||     165       175       185|      195       205       215|      225       235||     256       266       276       286       296       306       316  ||   334       344       354   |   364 |     374|      390   |   400       410
                                                                       51|   66|   78|      90|   99|  119|                   147|                          186-MSE                       216-MSE             236|                                                                    319|                           358-MSE 366-MSE 374|          394-MSE            
                                                                        61    73    82       94   114   125                    157                                                                             248                                                                     328                                            381
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AFR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AFR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AFR)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:146 - Ser A:147   [ RasMol ]  
    Ser B:215 - Mse B:216   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DYHC_YEAST | P36022: 3j67 3j68 3qmz 4ai6 4akg 4akh 4aki 4w8f

(-) Related Entries Specified in the PDB File

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