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(-) Description

Title :  THE PERIPLASMIC BINDING PROTEIN CEUE OF CAMPYLOBACTER JEJUNI PREFERENTIALLY BINDS THE IRON(III) COMPLEX OF THE LINEAR DIMER COMPONENT OF ENTEROBACTIN
 
Authors :  D. J. Raines, O. V. Moroz, J. P. Turkenburg, K. S. Wilson, A. K. Duhme-Kla
Date :  24 Aug 15  (Deposition) - 25 May 16  (Release) - 08 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  C  (1x)
Biol. Unit 3:  B  (1x)
Keywords :  Metal Binding Protein, Enterobactin Uptake, Iron, Siderophore, Binding Protein, Tetradentate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Raines, O. V. Moroz, E. V. Blagova, J. P. Turkenburg, K. S. Wilson, A. Duhme-Klair
Bacteria In An Intense Competition For Iron: Key Component Of The Campylobacter Jejuni Iron Uptake System Scavenges Enterobactin Hydrolysis Product.
Proc. Natl. Acad. Sci. Usa V. 113 5850 2016
PubMed-ID: 27162326  |  Reference-DOI: 10.1073/PNAS.1520829113

(-) Compounds

Molecule 1 - ENTEROCHELIN UPTAKE PERIPLASMIC BINDING PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-YSBLIC
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 44-330
    Organism Scientific: CAMPYLOBACTER JEJUNI
    Organism Taxid: 197
    Other Details: N-TERMINAL TRUNCATION
    Synonym: CEUE

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):   C
Biological Unit 3 (1x):  B 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1DMS3Ligand/IonDIMETHYL SULFOXIDE
2EHS2Ligand/Ion2S-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-[(2S)-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-HYDROXY-PROPANOYL]OXY-PROPANOIC ACID
3FE3Ligand/IonFE (III) ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1DMS2Ligand/IonDIMETHYL SULFOXIDE
2EHS1Ligand/Ion2S-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-[(2S)-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-HYDROXY-PROPANOYL]OXY-PROPANOIC ACID
3FE-1Ligand/IonFE (III) ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1DMS1Ligand/IonDIMETHYL SULFOXIDE
2EHS-1Ligand/Ion2S-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-[(2S)-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-HYDROXY-PROPANOYL]OXY-PROPANOIC ACID
3FE-1Ligand/IonFE (III) ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1DMS-1Ligand/IonDIMETHYL SULFOXIDE
2EHS1Ligand/Ion2S-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-[(2S)-2-[(2,3-DIHYDROXYPHENYL)CARBONYLAMINO]-3-HYDROXY-PROPANOYL]OXY-PROPANOIC ACID
3FE-1Ligand/IonFE (III) ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:227 , TYR A:288 , EHS A:312BINDING SITE FOR RESIDUE FE A 311
2AC2SOFTWAREGLN A:98 , ARG A:118 , LYS A:121 , ARG A:205 , THR A:226 , HIS A:227 , ARG A:249 , TYR A:288 , FE A:311BINDING SITE FOR RESIDUE EHS A 312
3AC3SOFTWAREILE A:208 , TRP A:287 , ALA A:290 , GLY A:292BINDING SITE FOR RESIDUE DMS A1311
4AC4SOFTWARESER A:120 , LYS A:121 , TYR A:123 , ASP A:124BINDING SITE FOR RESIDUE DMS A1312
5AC5SOFTWAREHIS B:227 , ARG B:249 , TYR B:288 , EHS B:312BINDING SITE FOR RESIDUE FE B 311
6AC6SOFTWAREASP A:184 , GLN B:98 , ARG B:118 , LYS B:121 , ARG B:205 , THR B:226 , HIS B:227 , ARG B:249 , LEU B:253 , TYR B:288 , FE B:311BINDING SITE FOR RESIDUE EHS B 312
7AC7SOFTWAREARG C:118 , HIS C:227 , TYR C:288BINDING SITE FOR RESIDUE FE C 311
8AC8SOFTWARELEU C:24 , SER C:40 , PHE C:134 , GLY C:136 , ASP C:138BINDING SITE FOR RESIDUE DMS C1311

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5ADW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val C:224 -Gly C:225

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ADW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ADW)

(-) Exons   (0, 0)

(no "Exon" information available for 5ADW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...eeeeee..eeeeee.....eee.hhhhhhhhhhh.hhh.eee.hhhhhhhhhhhhh...........hhhhhhhhh..eeeehhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.....eeeeeeee..eeeee......hhhhhh...ee...........eeehhhhhhhhh..eeeeeehhhhhh...hhhhhh.hhhhhhhhhhhh..eeeehhhhhh.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5adw A  24 LPISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKISAFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNKERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK 310
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       


Chain B from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...eeeeee..eeeeee.....eee.hhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhh...........hhhhhhhhh..eeeehhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......eeeeeeee..eeeee......hhhhhh...ee...........eeehhhhhhhhh..eeeeeehhhhhh...hhhhhh.hhhhhhhhhhhh..eeeehhhhhh.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5adw B  24 LPISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKISAFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNKERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK 310
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       


Chain C from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee...eeeeee..eeeeee.....eee.hhhhhhhhhhh.hhh.eee.hhhhhhhhhhhhh...........hhhhhhhhh..eeeehhhhhhhhhhhhhhh.eee......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......eeeeeeee..eeeee......hhhhhh...ee...........eeehhhhhhhhh..eeeeeehhhhhh...hhhhhh.hhhhhhhhhhhh..eeeehhhhhh.......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5adw C  24 LPISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLPKYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNANFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKISAFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNKERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK 310
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ADW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ADW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ADW)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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UniProtKB/TrEMBL
        Q0P8Q4_CAMJE | Q0P8Q4: 2chu 3zkw 5a1j 5a5d 5a5v 5ad1 5adv 5mbq 5mbt 5mbu

(-) Related Entries Specified in the PDB File

5adv THE PERIPLASMIC BINDING PROTEIN CEUE OF CAMPYLOBACTER JEJUNI PREFERENTIALLY BINDS THE IRON(III) COMPLEX OF THE LINEAR DIMER COMPONENT OF ENTEROBACTIN