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(-) Description

Title :  MCG IMMUNOGLOBULIN VARIABLE DOMAIN WITH SULFASALAZINE
 
Authors :  B. Brumshtein, S. R. Esswein, L. Salwinski, M. L. Phillips, A. T. Ly, D. C M. R. Sawaya, D. S. Eisenberg
Date :  17 Aug 15  (Deposition) - 02 Dec 15  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Immune System, Mcg, Immunoglobulin Variable Domain, Methylene Blue (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Brumshtein, S. R. Esswein, L. Salwinski, M. L. Phillips, A. T. Ly, D. Cascio, M. R. Sawaya, D. S. Eisenberg
Inhibition By Small-Molecule Ligands Of Formation Of Amyloi Fibrils Of An Immunoglobulin Light Chain Variable Domain.
Elife V. 4 10935 2015
PubMed-ID: 26576950  |  Reference-DOI: 10.7554/ELIFE.10935

(-) Compounds

Molecule 1 - MCG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: IG LAMBDA CHAIN V-II REGION MGC
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Tissue: BLOOD

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1SAS1Ligand/Ion2-HYDROXY-(5-([4-(2-PYRIDINYLAMINO)SULFONYL]PHENYL)AZO)BENZOIC ACID
2SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:34 , VAL A:35 , SER A:36 , TYR A:38 , PRO A:46 , TYR A:51 , GLU A:52 , ASP A:97 , PHE A:99 , HOH A:2058 , HOH A:2089 , HOH A:2090 , HOH A:2130BINDING SITE FOR RESIDUE SAS A 1111
2AC2SOFTWAREPRO A:61 , ARG A:63 , GLN A:81 , HOH A:2098BINDING SITE FOR RESIDUE SO4 A 1112

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:22 -A:90

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5ACL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5ACL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5ACL)

(-) Exons   (0, 0)

(no "Exon" information available for 5ACL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
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(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:109
                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeee.....eeeeee...........eeeeee......eeee.............eeeeee..eeeeee...hhhhheeeeeeee.....eee...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 5acl A   2 SALTQPPSASGSLGQSVTISCTGTSSDVGGYNYVSWYQQHAGKAPKVIIYEVNKRPSGVPDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVL 110
                                    11        21        31        41        51        61        71        81        91       101
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5ACL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5ACL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5ACL)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LV208_HUMAN | P01709: 1a8j 1dcl 1mcw 2mcg 3mcg 4unt 4unu 4unv 5acm

(-) Related Entries Specified in the PDB File

5acm MCG IMMUNOGLOBULIN VARIABLE DOMAIN WITH METHYLENE BLUE