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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINOPEPTIDASE ERAP2 WITH LIGAND
 
Authors :  A. Mpakali, P. Giastas, E. Saridakis, E. Stratikos
Date :  31 Jul 15  (Deposition) - 30 Sep 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,C,E,F
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  C,F  (1x)
Keywords :  Aminopeptidase, Erap2, Zinc Ion Binding, Endoplasmic Reticulum, Hydrolase, Metalloprotease, L-Rap, Antigen Presentation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Mpakali, P. Giastas, N. Mathioudakis, I. M. Mavridis, E. Saridakis E. Stratikos
Structural Basis For Antigenic Peptide Recognition And Processing By Endoplasmic Reticulum (Er) Aminopeptidase 2.
J. Biol. Chem. V. 290 26021 2015
PubMed-ID: 26381406  |  Reference-DOI: 10.1074/JBC.M115.685909

(-) Compounds

Molecule 1 - ENDOPLASMATIC RETICULUM AMINOPEPTIDASE 2
    Chains: A, C
    EC Number: 3.4.11.1, 3.4.11.6
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Cell Line: HI5
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Expression System Vector: PFASTBAC
    Expression System Vector Type: BACULOVIRUS
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: LEUKOCYTE-DERIVED ARGININE AMINOPEPTIDASE, L-RAP
 
Molecule 2 - DG025
    Chains: E, F
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ACEF
Biological Unit 1 (1x): A E 
Biological Unit 2 (1x):  C F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (8, 40)

Asymmetric Unit (8, 40)
No.NameCountTypeFull Name
12X02Mod. Amino Acid[(1R)-1-AMINO-3-PHENYLPROPYL]PHOSPHONIC ACID
27GA2Mod. Amino Acid2,4-DIMETHYLPENTANAL
3BMA5Ligand/IonBETA-D-MANNOSE
4EDO4Ligand/Ion1,2-ETHANEDIOL
5LYN2Mod. Amino Acid2,6-DIAMINO-HEXANOIC ACID AMIDE
6MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7NAG22Ligand/IonN-ACETYL-D-GLUCOSAMINE
8ZN2Ligand/IonZINC ION
Biological Unit 1 (7, 20)
No.NameCountTypeFull Name
12X01Mod. Amino Acid[(1R)-1-AMINO-3-PHENYLPROPYL]PHOSPHONIC ACID
27GA1Mod. Amino Acid2,4-DIMETHYLPENTANAL
3BMA2Ligand/IonBETA-D-MANNOSE
4EDO2Ligand/Ion1,2-ETHANEDIOL
5LYN1Mod. Amino Acid2,6-DIAMINO-HEXANOIC ACID AMIDE
6MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
8ZN-1Ligand/IonZINC ION
Biological Unit 2 (6, 18)
No.NameCountTypeFull Name
12X01Mod. Amino Acid[(1R)-1-AMINO-3-PHENYLPROPYL]PHOSPHONIC ACID
27GA1Mod. Amino Acid2,4-DIMETHYLPENTANAL
3BMA3Ligand/IonBETA-D-MANNOSE
4EDO2Ligand/Ion1,2-ETHANEDIOL
5LYN1Mod. Amino Acid2,6-DIAMINO-HEXANOIC ACID AMIDE
6MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
7NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE
8ZN-1Ligand/IonZINC ION

(-) Sites  (23, 23)

Asymmetric Unit (23, 23)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:370 , HIS A:374 , GLU A:393 , 2X0 E:1BINDING SITE FOR RESIDUE ZN A1008
02AC2SOFTWAREHIS A:77 , ASP A:79 , SER A:221BINDING SITE FOR RESIDUE EDO A1964
03AC3SOFTWARELYS A:283 , SER A:285 , TYR A:287BINDING SITE FOR RESIDUE EDO A1965
04AC4SOFTWARENAG A:1074 , BMA A:1075 , HOH A:3276 , HOH A:3277BINDING SITE FOR RESIDUE MES A2002
05AC5SOFTWAREHIS C:370 , HIS C:374 , GLU C:393 , 2X0 F:1BINDING SITE FOR RESIDUE ZN C1020
06AC6SOFTWARESER C:280 , GLY C:281 , VAL C:282 , TYR C:318 , PRO C:319 , LEU C:320 , HOH C:3124BINDING SITE FOR RESIDUE EDO C1962
07AC7SOFTWAREGLN C:728BINDING SITE FOR RESIDUE EDO C1963
08AC8SOFTWAREHIS A:83 , ASN A:85 , GLU A:227 , GLY A:246 , LEU A:248 , ASP C:291BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1071 THROUGH NAG A1072 BOUND TO ASN A 85
09AC9SOFTWARESER A:102 , ASN A:103 , HOH A:3269 , HOH A:3270BINDING SITE FOR MONO-SACCHARIDE NAG A1069 BOUND TO ASN A 103
10BC1SOFTWARETHR A:118 , ASN A:119BINDING SITE FOR MONO-SACCHARIDE NAG A1081 BOUND TO ASN A 119
11BC2SOFTWAREASN A:219 , THR A:255 , VAL A:257 , LYS A:258 , TYR A:487 , MES A:2002 , HOH A:3271 , HOH A:3275BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1073 THROUGH BMA A1075 BOUND TO ASN A 219
12BC3SOFTWAREASN A:405 , ASP A:414BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1076 THROUGH BMA A1078 BOUND TO ASN A 405
13BC4SOFTWAREASN A:431 , LYS A:545BINDING SITE FOR MONO-SACCHARIDE NAG A1070 BOUND TO ASN A 431
14BC5SOFTWAREASN A:650 , LEU A:653 , HOH A:3273BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A1079 THROUGH NAG A1080 BOUND TO ASN A 650
15BC6SOFTWAREASN A:714 , HOH A:3274BINDING SITE FOR MONO-SACCHARIDE NAG A1082 BOUND TO ASN A 714
16BC7SOFTWAREHIS A:272 , SER A:273 , LEU A:274 , PRO A:290 , ASP A:291 , ARG A:293 , HOH A:3084 , HIS C:83 , ASN C:85 , GLU C:227 , LEU C:248 , HOH C:3009 , HOH C:3117 , HOH C:3118 , HOH C:3119 , HOH C:3122BINDING SITE FOR POLY-SACCHARIDE RESIDUES BMA C1001 THROUGH BMA C1005 BOUND TO ASN C 85
17BC8SOFTWARESER C:102 , ASN C:103BINDING SITE FOR MONO-SACCHARIDE NAG C1006 BOUND TO ASN C 103
18BC9SOFTWAREASN C:219 , THR C:255 , THR C:256 , VAL C:257 , LYS C:258 , TYR C:487 , HOH C:3120BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C1007 THROUGH NAG C1008 BOUND TO ASN C 219
19CC1SOFTWAREASN C:294BINDING SITE FOR MONO-SACCHARIDE NAG C1010 BOUND TO ASN C 294
20CC2SOFTWAREASN C:405 , ASP C:414BINDING SITE FOR MONO-SACCHARIDE NAG C1011 BOUND TO ASN C 405
21CC3SOFTWAREASN C:431 , LYS C:545 , LEU C:580BINDING SITE FOR MONO-SACCHARIDE NAG C1009 BOUND TO ASN C 431
22CC4SOFTWAREASN C:650BINDING SITE FOR MONO-SACCHARIDE NAG C1013 BOUND TO ASN C 650
23CC5SOFTWAREASN C:714 , HOH C:3123BINDING SITE FOR MONO-SACCHARIDE NAG C1012 BOUND TO ASN C 714

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:421 -A:460
2A:503 -A:514
3C:421 -C:460
4C:759 -C:766

(-) Cis Peptide Bonds  (17, 17)

Asymmetric Unit
No.Residues
1Ala A:56 -Thr A:57
2Lys A:132 -Pro A:133
3Gly A:134 -Lys A:135
4Glu A:200 -Pro A:201
5Asp A:507 -Phe A:508
6Phe A:508 -Thr A:509
7Ser A:510 -Gly A:511
8Cys A:514 -His A:515
9Ala A:923 -Gln A:924
10His A:962 -His A:963
11Ala C:56 -Thr C:57
12Lys C:132 -Pro C:133
13Gly C:134 -Lys C:135
14Glu C:200 -Pro C:201
15Leu C:889 -Gly C:890
16Ser C:926 -His C:927
17Ala E:6 -Phe E:7

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AB0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AB0)

(-) Exons   (0, 0)

(no "Exon" information available for 5AB0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:911
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeeeeeee....eeeeeeeeeeee.....eeeee....eeeeeeee...hhhhh......eeeeehhh.eeeee........eeeeeeeeeeee......eeeeeeee.....eeeeeeee....hhhhh...........eeeeeeee....eeee...eeeeee.....eeeee......hhhhh.eeee..eeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeeeee......ee....eeeeehhhhh......hhhhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhh...eeeeee....eeeeeeee......................eeeeeee..eeeeeeeee...eeeee.......eee.hhhh...eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ab0 A  54 PVATNGERFPWQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLESDFTSGGVCHSDPKMTSNMLAFLGENAEVKEMMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTRHHH 964
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803       813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963 


Chain C from PDB  Type:PROTEIN  Length:882
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...................eeeeeeeeeeeee....eeeeeeeeeeee.....eeeee....eeeeeeeee.............eeeee....eeeee........eeeeeeeeeeee......eeeeeeee.....eeeeeeee....hhhhh...........eeeeeeee....eeee...eeeeee.....eeeee......hhhhh.eeee..eeeeee.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeee.......ee....eeee.hhhh.......hhhhhhhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeehhhhhhhhhhh..hhhhhhhhhhhhh....eeeeeeee..eeeeeeee........hhhhh.........eeeeeee......eeeee...eeeee.......eee.hhhh...eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh.hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.......hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ab0 C  54 PVATNGERFPWQELRLPSVVIPLHYDLFVHPNLTSLDFVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVPEKLTPHLKYYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNGENAEVKEMMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPEWRALQERYLWHIPLTYSTSSSNVIHRHILKSKTDTLDLPEKTSWVKFNVDSNGYYIVHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKPVIDRQSWSDKGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVYSVGAQTTAGWNYLLEQYELSMSSAEQNKILYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQGSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTRH 962
                                    63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         501|                                                                                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          529                                                                                                                                                                                                                                                                                                                                                                                                                                                 


Chain E from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 5ab0 E   1 xxKHHAFSFk  10
                            ||      10
                            1-2X0   10-LYN
                             2-7GA    


Chain F from PDB  Type:PROTEIN  Length:10
                                          
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                 5ab0 F   1 xxKHHAFSFk  10
                            ||      10
                            ||      10-LYN
                            1-2X0     
                             2-7GA
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AB0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AB0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AB0)

(-) Gene Ontology  (22, 22)

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  Cis Peptide Bonds
    Ala A:56 - Thr A:57   [ RasMol ]  
    Ala A:923 - Gln A:924   [ RasMol ]  
    Ala C:56 - Thr C:57   [ RasMol ]  
    Ala E:6 - Phe E:7   [ RasMol ]  
    Asp A:507 - Phe A:508   [ RasMol ]  
    Cys A:514 - His A:515   [ RasMol ]  
    Glu A:200 - Pro A:201   [ RasMol ]  
    Glu C:200 - Pro C:201   [ RasMol ]  
    Gly A:134 - Lys A:135   [ RasMol ]  
    Gly C:134 - Lys C:135   [ RasMol ]  
    His A:962 - His A:963   [ RasMol ]  
    Leu C:889 - Gly C:890   [ RasMol ]  
    Lys A:132 - Pro A:133   [ RasMol ]  
    Lys C:132 - Pro C:133   [ RasMol ]  
    Phe A:508 - Thr A:509   [ RasMol ]  
    Ser A:510 - Gly A:511   [ RasMol ]  
    Ser C:926 - His C:927   [ RasMol ]  
 
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  5ab0
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  ERAP2_HUMAN | Q6P179
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  3.4.11.1
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  3.4.11.6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ERAP2_HUMAN | Q6P179: 3se6 4e36 4jbs 5ab2 5cu5 5j6s 5k1v

(-) Related Entries Specified in the PDB File

5ab2 CRYSTAL STRUCTURE OF AMINOPEPTIDASE ERAP2 WITH LIGAND