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(-) Description

Title :  K. LACTIS LST4 LONGIN DOMAIN
 
Authors :  A. Pacitto, D. B. Ascher, T. L. Blundell
Date :  21 May 15  (Deposition) - 13 Apr 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.14
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  C  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Longin, Denn, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Pacitto, D. B. Ascher, L. H. Wong, B. K. Blaszczyk, R. K. Nookala, N. Zhang, S. Dokudovskaya, T. P. Levine, T. L. Blundell
Lst4, The Yeast Fnip1/2 Orthologue, Is A Denn-Family Protein.
Open Biology V. 5 50174 2015
PubMed-ID: 26631379  |  Reference-DOI: 10.1098/RSOB.150174

(-) Compounds

Molecule 1 - PROTEIN LST4
    Chains: C, A, B, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 58-226
    Gene: LST4, KLLA0A06622G
    Organism Common: YEAST
    Organism Scientific: KLUYVEROMYCES LACTIS
    Organism Taxid: 28985

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x):   C 
Biological Unit 2 (1x): A   
Biological Unit 3 (1x):  B  
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZY8)

(-) Sites  (0, 0)

(no "Site" information available for 4ZY8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZY8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZY8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZY8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZY8)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZY8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee.......hhhhhhhhhh...hhhhhh.eeeeeeeehhh.eeeeeeeee.......eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zy8 A  10 GFRLIISQELNYQVVLDHSSVNFAHIPLNELKDYIFGSIRTIDYSASSDKIKVVKSANIVLFTRIFYLNEKSTLRIAISCCVTDDVLPVLTECWPHISSFLDQCENTLLKYLAKNDTQFLPHCIEVAAVLQTFQRKIIPLLSGYSL 172
                                    19|       36  ||    49      ||60        70        80        90       100       110       120       130       140 ||    156       166      
                                    19|          39|           56|                                                                                 142|                       
                                     27           43            58                                                                                  149                       


Chain B from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee....eeeeeee......hhhhhhhhhhhhhhhh.eeeeeeee....eeeeeeeee.......eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zy8 B  10 GFRLIISQELNYQVVLDHSSVNFHIPLNELKDYIFRTIDYSASSDKIKVVKSANIVLFTRIFYLNEKSTLRIAISCCVTDDVLPVLTECWPHISSFLDQCENTLLKYLAKNDTQFLPHDWKARNCIEVAAVLQTFQRKIIPLLS 168
                                    19|       36   ||   50    ||  64        74        84        94       104       114       124       134       144       154       164    
                                    19|           40|        55|                                                                                                            
                                     27            45         60                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee...eeeeeee......hhhhhhhhhhh..........eeeeeeehhh.eeeeeeeee.......eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zy8 C   9 GGFRLIISQELYQVVLDHSSVNFHIPLNELKDYIFGSIRTIDYSASSDKIKVVKSANIVLFTRIFYLNEKSTLRIAISCCVTDDVLPVLTECWPHISSFLDQCENTLLKYLAKNDTQFLPHDWNCIEVAAVLQTFQRKIIPLLS 168
                                    18||      36  ||    50     || 61        71        81        91       101       111       121       131       141  ||   154       164    
                                     19|         39|          56|                                                                                   144|                    
                                      28          44           58                                                                                    148                    


Chain D from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...eeeeeeee....hhhhhhhhhh..hhhhhh.eeeeeeeehhh.eeeeeeeee.......eeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zy8 D  10 GFRLIISQELGNYQVVLDHSSVHIPLNELKDYIFGIRTIDYSASSDKIKVVKSANIVLFTRIFYLNEKSTLRIAISCCVTDDVLPVLTECWPHISSFLDQCENTLLKYLAKNDTQFLPHDWKARNCIEVAAVLQTFQRKIIPLLS 168
                                    19||      35 ||     51    ||  63        73        83        93       103       113       123       133       143       153       163     
                                     20|        37|          56|                                                                                                             
                                      27         44           59
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZY8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZY8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZY8)

(-) Gene Ontology  (8, 8)

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