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(-) Description

Title :  PIG BRAIN GABA-AT INACTIVATED BY (Z)-(1S,3S)-3-AMINO-4-FLUOROMETHYLENYL-1-CYCLOPENTANOIC ACID.
 
Authors :  R. Wu, H. Lee, H. V. Le, E. Doud, R. Sanishvili, P. Compton, N. L. Kelleher R. B. Silverman, D. Liu
Date :  14 May 15  (Deposition) - 08 Jul 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Gaba Aminotransferase, Amino-4-Fluoromethylenyl-1-Cyclopentanoic Acid, Inactivation, Mechanism-Based, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Lee, H. V. Le, R. Wu, E. Doud, R. Sanishvili, J. F. Kellie, P. D. Compton, B. Pachaiyappan, D. Liu, N. L. Kelleher, R. B. Silverman
Mechanism Of Inactivation Of Gaba Aminotransferase By (E)- And (Z)-(1S, 3S)-3-Amino-4-Fluoromethylenyl-1-Cyclopentanoic Acid.
Acs Chem. Biol. V. 10 2087 2015
PubMed-ID: 26110556  |  Reference-DOI: 10.1021/ACSCHEMBIO.5B00212

(-) Compounds

Molecule 1 - 4-AMINOBUTYRATE AMINOTRANSFERASE, MITOCHONDRIAL
    Chains: A, B, C, D
    EC Number: 2.6.1.19, 2.6.1.22
    Engineered: YES
    Expression System: SUS SCROFA DOMESTICUS
    Expression System Taxid: 9825
    Fragment: UNP RESIDUES 39-499
    Gene: ABAT, GABAT
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823
    Synonym: (S)-3-AMINO-2-METHYLPROPIONATE TRANSAMINASE,GABA AMINOTRANSFERASE,GABA-AT,GAMMA-AMINO-N-BUTYRATE TRANSAMINASE,GABA-T, L-AIBAT

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1FSF2Ligand/Ion4FE-2S-O HYBRID CLUSTER
2GOL2Ligand/IonGLYCEROL
3RW24Ligand/Ion(1S)-4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]CYCLOPENT-3-ENE-1,3-DICARBOXYLIC ACID
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1FSF1Ligand/Ion4FE-2S-O HYBRID CLUSTER
2GOL1Ligand/IonGLYCEROL
3RW22Ligand/Ion(1S)-4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]CYCLOPENT-3-ENE-1,3-DICARBOXYLIC ACID
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1FSF1Ligand/Ion4FE-2S-O HYBRID CLUSTER
2GOL1Ligand/IonGLYCEROL
3RW22Ligand/Ion(1S)-4-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]CYCLOPENT-3-ENE-1,3-DICARBOXYLIC ACID

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:134 , CYS A:135 , CYS A:138 , ALA B:134 , CYS B:135 , CYS B:138binding site for residue FSF A 501
2AC2SOFTWAREILE A:72 , CYS A:135 , GLY A:136 , SER A:137 , ASN A:140 , PHE A:189 , HIS A:190 , ARG A:192 , GLU A:265 , GLU A:270 , ASP A:298 , VAL A:300 , GLN A:301 , LYS A:329 , HOH A:617 , HOH A:634 , HOH A:795 , HOH A:808 , PHE B:351 , ASN B:352 , THR B:353binding site for residue RW2 A 502
3AC3SOFTWARELYS B:125 , HIS B:313 , GLU B:314 , TRP B:316 , GLY B:317 , LEU B:318 , PRO B:321 , HOH B:620binding site for residue GOL B 501
4AC4SOFTWAREPHE A:351 , ASN A:352 , THR A:353 , CYS B:135 , GLY B:136 , SER B:137 , PHE B:189 , HIS B:190 , ARG B:192 , GLU B:265 , ASP B:298 , VAL B:300 , GLN B:301 , LYS B:329 , HOH B:611 , HOH B:612 , HOH B:735 , HOH B:824binding site for residue RW2 B 502
5AC5SOFTWAREASP C:278 , ARG C:282 , HIS C:315 , HOH C:718 , HOH C:897binding site for residue GOL C 501
6AC6SOFTWAREILE C:72 , CYS C:135 , GLY C:136 , SER C:137 , PHE C:189 , HIS C:190 , ARG C:192 , GLU C:265 , GLU C:270 , ASP C:298 , VAL C:300 , GLN C:301 , LYS C:329 , ARG C:445 , HOH C:628 , HOH C:644 , HOH C:741 , HOH C:805 , HOH C:837 , PHE D:351 , ASN D:352 , THR D:353binding site for residue RW2 C 502
7AC7SOFTWAREALA C:134 , CYS C:135 , CYS C:138 , ALA D:134 , CYS D:135 , CYS D:138binding site for residue FSF D 501
8AC8SOFTWAREPHE C:351 , ASN C:352 , THR C:353 , ILE D:72 , CYS D:135 , GLY D:136 , SER D:137 , ASN D:140 , PHE D:189 , HIS D:190 , ARG D:192 , GLU D:265 , GLU D:270 , ASP D:298 , VAL D:300 , GLN D:301 , LYS D:329 , HOH D:611 , HOH D:747 , HOH D:830 , HOH D:869binding site for residue RW2 D 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZSY)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Val A:22 -Pro A:23
2Ala A:174 -Pro A:175
3Tyr A:225 -Pro A:226
4Val B:22 -Pro B:23
5Ala B:174 -Pro B:175
6Tyr B:225 -Pro B:226
7Val C:22 -Pro C:23
8Ala C:174 -Pro C:175
9Tyr C:225 -Pro C:226
10Val D:22 -Pro D:23
11Ala D:174 -Pro D:175
12Tyr D:225 -Pro D:226

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZSY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZSY)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZSY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhh.................eee.....eeee.hhhhhh......hhhhhhhhhh..hhhhhhh..........hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh........eeeee.......hhhhhhh...hhhhhh........ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhh..eeeee............hhhhhhh......eeeehhhhh.eeeee.hhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeee..hhhhhhhhhhhhhhh.ee.eee...eeee......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsy A  11 FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGESAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470 


Chain B from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhh.........hhhhh...eee.....eeee.hhhhhh......hhhhhhhhhh..hhhhhhh..........hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh........eeeee.......hhhhhhh...hhhhhh........ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhh..eeeee............hhhhhhh......eeeehhhhh.eeeee.hhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeee..hhhhhhhhhhhhhhh.ee.eee...eee.......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsy B  12 DYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGESAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471


Chain C from PDB  Type:PROTEIN  Length:461
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhhhhh.................eee.....eeee.hhhhhh......hhhhhhhhhh..hhhhhhh..........hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..........eeeee.......hhhhhhh...hhhhhh........ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhh..eeeee............hhhhhhh......eeeehhhhh.eeeee.hhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeee..hhhhhhhhhhhhhhhhee.eee...eee.......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsy C  11 FDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGESAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470 


Chain D from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............hhhhhhhhhhhhhhh.........hhhhh...eee.....eeee.hhhhhh......hhhhhhhhhh..hhhhhhh..........hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..........eeeee.......hhhhhhh...hhhhhh........ee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeee............hhhhhhhhhhhhhhh..eeeee............hhhhhhh......eeeehhhhh.eeeee.hhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee..eeeee..hhhhhhhhhhhhhhh.ee.eee...eeee......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsy D  12 DYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGESAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILADF 471
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZSY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZSY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZSY)

(-) Gene Ontology  (19, 19)

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  4zsy
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 Related Entries

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        GABT_PIG | P80147: 1ohv 1ohw 1ohy 4y0d 4y0h 4y0i 4zsw

(-) Related Entries Specified in the PDB File

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