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(-) Description

Title :  CRYSTAL STRUCTURE OF THE EFFECTOR-BINDING DOMAIN OF DASR (DASR-EBD) IN COMPLEX WITH N-ACETYLGLUCOSAMINE-6-PHOSPHATE
 
Authors :  S. B. Fillenberg, Y. A. Muller
Date :  13 May 15  (Deposition) - 08 Jun 16  (Release) - 13 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription, Repressor, Bacterial Transcription Regulation, Transcription Factor, Gntr/Hutc Family, Effector-Binding Domain, N- Acetylglucosamine Utilization, Master Regulator, N- Acetylglucosamine-6-Phosphate (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. B. Fillenberg, M. D. Friess, S. Korner, R. A. Bockmann, Y. A. Muller
Crystal Structures Of The Global Regulator Dasr From Streptomyces Coelicolor: Implications For The Allosteric Regulation Of Gntr/Hutc Repressors.
Plos One V. 11 57691 2016
PubMed-ID: 27337024  |  Reference-DOI: 10.1371/JOURNAL.PONE.0157691

(-) Compounds

Molecule 1 - HTH-TYPE TRANSCRIPTIONAL REPRESSOR DASR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 88-254
    Gene: DASR, SCO5231, SC7E4.28C
    Organism Scientific: STREPTOMYCES COELICOLOR A3(2)
    Organism Taxid: 100226
    Other Details: DASR-EBD COMPRISES RESIDUES 88-254 OF FULL-LENGTH DASR

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
116G1Ligand/IonN-ACETYL-D-GLUCOSAMINE-6-PHOSPHATE
24QY1Ligand/IonBETA-N-ACETYLGLUCOSAMINE-6-PHOSPHATE
3EDO4Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:96 , SER A:97 , TYR A:98 , THR A:99 , ARG A:142 , ARG A:144 , GLU A:154 , SER A:175 , LEU A:176 , TYR A:177 , GLU A:193 , ARG A:221 , GLU A:232 , VAL A:234 , SER A:236 , TYR A:238 , HOH A:401 , HOH A:457binding site for residue 16G A 301
2AC2SOFTWAREHIS A:222 , GLN A:224 , ARG B:248binding site for residue EDO A 302
3AC3SOFTWARELYS A:172 , ARG A:235 , HOH A:444 , HOH A:456binding site for residue EDO A 303
4AC4SOFTWARESER B:97 , TYR B:98 , THR B:99 , ARG B:142 , ARG B:144 , GLU B:154 , SER B:175 , LEU B:176 , TYR B:177 , GLU B:193 , ARG B:221 , GLU B:232 , VAL B:234 , SER B:236 , HOH B:407 , HOH B:411 , HOH B:437 , HOH B:484binding site for residue 4QY B 301
5AC5SOFTWAREARG A:248 , GLU B:190 , ALA B:191 , GLU B:192 , HIS B:222 , GLN B:224binding site for residue EDO B 302
6AC6SOFTWAREARG B:124 , THR B:155 , HIS B:157 , LYS B:172 , TRP B:233 , ARG B:235 , HOH B:450binding site for residue EDO B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZSK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZSK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZSK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZSK)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZSK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee....hhhhhhhhhh..eeeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee.....hhhhhh....hhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee....eeeeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsk A  87 MKVSQALQLTSYTEDMRAQGLEPTSQLLDIGYITADDRLAGLLDITAGGRVLRIERLRMANGEPMAIETTHLSAKRFPALRRSLVKYTSLYTALAEVYDVHLAEAEETIETSLATPREAGLLGTDVGLPMLMLSRHSQDRTGQPVEWVRSVYRGDRYKFVARLKRP 252
                                    96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246      


Chain B from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhh...eeeeeeeeeeee.hhhhhhhhh.....eeeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeee.hhhhhhhh......eeeeeeeeeee....eeeeeeeeee...eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zsk B  88 KVSQALQLTSYTEDMRAQGLEPTSQLLDIGYITADDRLAGLLDITAGGRVLRIERLRMANGEPMAIETTHLSAKRFPALRRSLVKYTSLYTALAEVYDVHLAEAEETIETSLATPREAGLLGTDVGLPMLMLSRHSQDRTGQPVEWVRSVYRGDRYKFVARLKRP 252
                                    97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZSK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZSK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZSK)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DASR_STRCO | Q9K492: 4zs8 4zsb 4zsi

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