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(-) Description

Title :  AKAP18:PKA-RIIALPHA STRUCTURE REVEALS CRUCIAL ANCHOR POINTS FOR RECOGNITION OF REGULATORY SUBUNITS OF PKA
 
Authors :  F. Goetz, Y. Roske, K. Faelber, K. Zuehlke, K. Autenrieth, A. Kreuchwig G. Krause, F. W. Herberg, O. Daumke, U. Heinemann, E. Klussmann
Date :  07 May 15  (Deposition) - 04 May 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.63
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R
Biol. Unit 1:  A,B,M  (1x)
Biol. Unit 2:  C,D,N  (1x)
Biol. Unit 3:  E,F,O  (1x)
Biol. Unit 4:  G,H,P  (1x)
Biol. Unit 5:  I,J,Q  (1x)
Biol. Unit 6:  K,L,R  (1x)
Keywords :  Anchor Points, Amphiphathic Helix, Akap, Dd-Domain, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Gotz, Y. Roske, M. S. Schulz, K. Autenrieth, D. Bertinetti, K. Faelber, K. Zuhlke, A. Kreuchwig, E. J. Kennedy, G. Krause, O. Daumke, F. W. Herberg, U. Heinemann, E. Klussmann
Akap18:Pka-Rii Alpha Structure Reveals Crucial Anchor Point For Recognition Of Regulatory Subunits Of Pka.
Biochem. J. V. 473 1881 2016
PubMed-ID: 27102985  |  Reference-DOI: 10.1042/BCJ20160242

(-) Compounds

Molecule 1 - CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY SUBUNIT
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PRKAR2A, PKR2, PRKAR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - A-KINASE ANCHOR PROTEIN 7 ISOFORMS ALPHA AND BETA
    Chains: M, N, O, P, Q, R
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 43-82
    Gene: AKAP7, AKAP15, AKAP18
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: AKAP-7 ISOFORMS ALPHA AND BETA,A-KINASE ANCHOR PROTEIN 18 KDA,AKAP 18,PROTEIN KINASE A-ANCHORING PROTEIN 7 ISOFORMS ALPHA/BETA, PRKA7 ISOFORMS ALPHA/BETA

 Structural Features

(-) Chains, Units

  123456789101112131415161718
Asymmetric Unit : ABCDEFGHIJKLMNOPQR
Biological Unit 1 (1x): AB          M     
Biological Unit 2 (1x):   CD         N    
Biological Unit 3 (1x):     EF        O   
Biological Unit 4 (1x):       GH       P  
Biological Unit 5 (1x):         IJ      Q 
Biological Unit 6 (1x):           KL     R

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1CD4Ligand/IonCADMIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
Biological Unit 5 (0, 0)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
Biological Unit 6 (0, 0)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:41 , GLU D:41 , GLU I:41binding site for residue CD A 101
2AC2SOFTWAREGLU B:41 , GLU C:41 , GLU J:41binding site for residue CD B 101
3AC3SOFTWAREGLU F:41 , GLU G:41 , GLU K:41binding site for residue CD F 101
4AC4SOFTWAREGLU E:41 , GLU H:41 , GLU L:41binding site for residue CD H 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZP3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZP3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZP3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZP3)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZP3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:43
                                                                          
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                  4zp3 A  1 SHIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    10        20        30        40   


Chain B from PDB  Type:PROTEIN  Length:39
                                                                      
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                  4zp3 B  5 IPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    14        24        34         


Chain C from PDB  Type:PROTEIN  Length:39
                                                                      
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                  4zp3 C  5 IPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    14        24        34         


Chain D from PDB  Type:PROTEIN  Length:41
                                                                        
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                  4zp3 D  3 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    12        22        32        42 


Chain E from PDB  Type:PROTEIN  Length:39
                                                                      
               SCOP domains --------------------------------------- SCOP domains
               CATH domains --------------------------------------- CATH domains
               Pfam domains --------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------- PROSITE
                 Transcript --------------------------------------- Transcript
                  4zp3 E  5 IPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    14        24        34         


Chain F from PDB  Type:PROTEIN  Length:41
                                                                        
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                  4zp3 F  3 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    12        22        32        42 


Chain G from PDB  Type:PROTEIN  Length:42
                                                                         
               SCOP domains ------------------------------------------ SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains ------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
                 Transcript ------------------------------------------ Transcript
                  4zp3 G  2 HIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    11        21        31        41  


Chain H from PDB  Type:PROTEIN  Length:41
                                                                        
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                  4zp3 H  3 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    12        22        32        42 


Chain I from PDB  Type:PROTEIN  Length:38
                                                                     
               SCOP domains -------------------------------------- SCOP domains
               CATH domains -------------------------------------- CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                  4zp3 I  6 PPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    15        25        35        


Chain J from PDB  Type:PROTEIN  Length:41
                                                                        
               SCOP domains ----------------------------------------- SCOP domains
               CATH domains ----------------------------------------- CATH domains
               Pfam domains ----------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------- PROSITE
                 Transcript ----------------------------------------- Transcript
                  4zp3 J  3 IQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    12        22        32        42 


Chain K from PDB  Type:PROTEIN  Length:38
                                                                     
               SCOP domains -------------------------------------- SCOP domains
               CATH domains -------------------------------------- CATH domains
               Pfam domains -------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------- PROSITE
                 Transcript -------------------------------------- Transcript
                  4zp3 K  6 PPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    15        25        35        


Chain L from PDB  Type:PROTEIN  Length:43
                                                                          
               SCOP domains ------------------------------------------- SCOP domains
               CATH domains ------------------------------------------- CATH domains
               Pfam domains ------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------- PROSITE
                 Transcript ------------------------------------------- Transcript
                  4zp3 L  1 SHIQIPPGLTELLQGYTVEVLRQQPPDLVEFAVEYFTRLREAR 43
                                    10        20        30        40   


Chain M from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4zp3 M 49 DAELVRLSKRLVENAVLKAVQQYLEETQ 76
                                    58        68        


Chain N from PDB  Type:PROTEIN  Length:28
                                                           
               SCOP domains ---------------------------- SCOP domains
               CATH domains ---------------------------- CATH domains
               Pfam domains ---------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------- SAPs(SNPs)
                    PROSITE ---------------------------- PROSITE
                 Transcript ---------------------------- Transcript
                  4zp3 N 48 DDAELVRLSKRLVENAVLKAVQQYLEET 75
                                    57        67        


Chain O from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  4zp3 O 48 DDAELVRLSKRLVENAVLKAVQQYLEE 74
                                    57        67       


Chain P from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains ------------------------------ SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  4zp3 P 51 ELVRLSKRLVENAVLKAVQQYLEETQNKNK 80
                                    60        70        80


Chain Q from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  4zp3 Q 48 DDAELVRLSKRLVENAVLKAVQQYLEE 74
                                    57        67       


Chain R from PDB  Type:PROTEIN  Length:27
                                                          
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                  4zp3 R 48 DDAELVRLSKRLVENAVLKAVQQYLEE 74
                                    57        67
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZP3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZP3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZP3)

(-) Gene Ontology  (40, 49)

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  4zp3
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  KAP2_HUMAN | P13861
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AKA7G_HUMAN | Q9P0M2: 5jj2
        KAP2_HUMAN | P13861: 2izx 2kyg 5h77 5h78 5xby

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4ZP3)