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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CHAETOMIUM THERMOPHILUM SQT1 BOUND TO THE N-TERMINUS OF THE RIBOSOMAL PROTEIN L10
 
Authors :  P. Pausch, F. Altegoer, G. Bange
Date :  07 May 15  (Deposition) - 01 Jul 15  (Release) - 08 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,Y
Biol. Unit 1:  A,Y  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Chaperone, Ribosomal Biogenesis, Wd40 - Repeat (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Pausch, U. Singh, Y. L. Ahmed, B. Pillet, G. Murat, F. Altegoer, G. Stier, M. Thoms, E. Hurt, I. Sinning, G. Bange, D. Kressler
Co-Translational Capturing Of Nascent Ribosomal Proteins By Their Dedicated Chaperones.
Nat Commun V. 6 7494 2015
PubMed-ID: 26112308  |  Reference-DOI: 10.1038/NCOMMS8494

(-) Compounds

Molecule 1 - SQT1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETDUET-1
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 54-533
    Gene: CTHT_0010920
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
 
Molecule 2 - 60S RIBOSOMAL PROTEIN L10-LIKE PROTEIN
    Chains: Y, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PETDUET-1
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CTHT_0063830
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
    Synonym: RPL10

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCY
Biological Unit 1 (1x): A  Y
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZOZ)

(-) Sites  (0, 0)

(no "Site" information available for 4ZOZ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZOZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:149 -Pro A:150
2Leu B:149 -Pro B:150

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZOZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZOZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZOZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:394
                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee......eeeeee......eeeeeee........eeeeeee.......eee......eeeeee......eeeeee....eeeeeee........eeeeeeee.....eeeeee........eeeeee....eeeeee........eeeeeee......eeeeee.....eeeeee....eeeee..hhhhhh........eeeee............eeeeee.....eeeeee....eeeee.......eeeee......eeeeee.....eeeeee....eeeee......eeeee........eeeeee.....hhhhh..eeeeee....eeeee.....eeeee....hhhhh..eeeee......eeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zoz A  54 ENDSIAYFDGHKDSVFAIAQHPLYPNIVATGGSEGDADDAPGKGYVLDISSLNPIFEIDGHTDSINALTFTLPRGDFLVSGGMDGRMRVYAVSVPQNGALAQFKFLAESQETEEINWFAPCPSPDHPNTIALGASDGSVWVFTLDASDPSNPVQIVQSYFLHTGPCTAGAWSPDGLLLATVSEDESLHVYDVFGVAASKSLVTDNGQTVVSLTNVDQRFAVEGGLFSVAVSPTGAVVAVGGAGGQIKIVGLPRLAGTILASLQIQSDNIESLAFSPSAPILAAGSTDGSIAVFDTSRSFALRRHLRGAHAEDPVVKVEFVKSPPNAAMAGWLLTSCGMDGVVRRWDLRGGGLVKEWKGHRSGQEGGGVLGFVQGETGERIVTVGDDAVVLVFEA 533
                                    63        73        83        93       103|      137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327   ||  372       382       392       402       412       422       432       442       452       462|      499       509       519       529    
                                                                           103|                                                                                                                                                                                                        331|                                                                                            462|                                           
                                                                            128                                                                                                                                                                                                         367                                                                                             490                                           


Chain B from PDB  Type:PROTEIN  Length:394
                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee......eeeeee......eeeeeee........eeeeeee.......eee......eeeeee......eeeeee....eeeeeee........eeeeeeee.....eeeeee........eeeeee....eeeeee........eeeeeee......eeeeee.....eeeeee....eeeee..hhhhhh........eeeee............eeeeee.....eeeeee....eeeee.......eeeee......eeeeee.....eeeeee....eeeee......eeeee........eeeeee............eeeeee....eeeee.....eeeee....hhhhh..eeeee......eeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zoz B  54 ENDSIAYFDGHKDSVFAIAQHPLYPNIVATGGSEGDADDAPGKGYVLDISSLNPIFEIDGHTDSINALTFTLPRGDFLVSGGMDGRMRVYAVSVPQNGALAQFKFLAESQETEEINWFAPCPSPDHPNTIALGASDGSVWVFTLDASDPSNPVQIVQSYFLHTGPCTAGAWSPDGLLLATVSEDESLHVYDVFGVAASKSLVTDNGQTVVSLTNVDQRFAVEGGLFSVAVSPTGAVVAVGGAGGQIKIVGLPRLAGTILASLQIQSDNIESLAFSPSAPILAAGSTDGSIAVFDTSRSFALRRHLRGAHAEDPVVKVEFVKSPPNAAMAGWLLTSCGMDGVVRRWDLRGGGLVKEWKGHRSGQEGGGVLGFVQGETGERIVTVGDDAVVLVFEA 533
                                    63        73        83        93       103|      137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327   ||  372       382       392       402       412       422       432       442       452       462|      499       509       519       529    
                                                                           103|                                                                                                                                                                                                        331|                                                                                            462|                                           
                                                                            128                                                                                                                                                                                                         367                                                                                             490                                           


Chain C from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ...hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4zoz C   2 ARRPARCYRYCK  13
                                    11  


Chain Y from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ...hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4zoz Y   2 ARRPARCYRYCK  13
                                    11
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZOZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZOZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZOZ)

(-) Gene Ontology  (4, 4)

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    Leu A:149 - Pro A:150   [ RasMol ]  
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 Related Entries

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        G0S0R0_CHATD | G0S0R0: 4zn4 4zoy

(-) Related Entries Specified in the PDB File

4zn4