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(-) Description

Title :  STRUCTURE OF THE NADPH-DEPENDENT THIOREDOXIN REDUCTASE FROM METHANOSARCINA MAZEI
 
Authors :  R. M. Buey, J. M. De Pereda, M. Balsera
Date :  04 May 15  (Deposition) - 29 Jun 16  (Release) - 29 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Oxidoreductase, Nadph, Thioredoxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. M. Buey, J. M. De Pereda, M. Balsera
Structure Of The Nadph-Dependent Thioredoxin Reductase From Methanosarcina Mazei
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THIOREDOXIN REDUCTASE
    Chains: A, B, C, D
    EC Number: 1.8.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Gene: MM_2353
    Organism Scientific: METHANOSARCINA MAZEI
    Organism Taxid: 192952

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZN0)

(-) Sites  (0, 0)

(no "Site" information available for 4ZN0)

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:133 -A:136
2B:133 -B:136
3C:133 -C:136
4D:133 -D:136

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Gly A:190 -Thr A:191
2Asp B:189 -Gly B:190
3Gly B:211 -Ile B:212
4Gly C:211 -Ile C:212

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZN0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZN0)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZN0)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhh...eeeee........hhhhhhhhhhhhh.eeee..eeeeee....eeeee..eeeeeeeeee...eee.......hhhhh...ee......hhhhh..eeeee..hhhhhhhhhhhhh...eeeee........hhhhhhhhh....eeee..eeeeeeee.......eeeeeeee.....eeeee..eeee...eee...........................eee..........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zn0 A   2 ASMYDLIIIGGGPAGLTAGIYAVRYGLDTLILERNSISGLELMERFRTHAQEVGVKTTITEVLSVRSEGTKKIITTDSGDLEAKAVIIATGANPKHLGVPGEKELISKGVSYCAICDGPFFRNKIVAVVGGGNSAVTDALFLSKVAQKVYLVHRRDHLKAARVLQDRVDGTPNIELILNSHVLEIVGTREGIKKVEKIILEDVNSRETRELSTNGVFIYVGIHPNTEFVDVEKDEGGFIKTDRWMETSEKGIYAAGDCRDTPIWQLVTAVRDGAIAATAAYEYIEKI 307
                                    11        21        31    ||  60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       
                                                             36|                                                                                                                                                                                                                                                           
                                                              56                                                                                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh.eeee..eeeeeee..eeeeee..eeeeeeeeee...eee.......hhhhh...ee......hhhhh..eeeee..hhhhhhhhhhhhh...eeeee........hhhhhhhhh....eeee..eeeeeeee.......eeeeeeee.....eeeee..eeee...eee...........................eee...........hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zn0 B   3 SMYDLIIIGGGPAGLTAGIYAVRYGLDTLILERNMERFRTHAQEVGVKTTITEVLSVRSEGTKKIITTDSGDLEAKAVIIATGANPKHLGVPGEKELISKGVSYCAICDGPFFRNKIVAVVGGGNSAVTDALFLSKVAQKVYLVHRRDHLKAARVLQDRVDGTPNIELILNSHVLEIVGTREGIKKVEKIILEDVNSRETRELSTNGVFIYVGIHPNTEFVDVEKDEGGFIKTDRWMETSEKGIYAAGDCRDTPIWQLVTAVRDGAIAATAAYEYIEKI 307
                                    12        22        32   ||   68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298         
                                                            36|                                                                                                                                                                                                                                                    
                                                             63                                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:279
                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhh.eeee..eeeeeee..eeeeee..eeeeeeeeee...eee...............ee......hhhhh..eeeee..hhhhhhhhhhhhh...eeeee........hhhhhhhhhhh..eeee..eeeeeeee......eeeeeeee.....eeeee..eeee...eee...........................eee.............hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zn0 C   2 ASMYDLIIIGGGPAGLTAGIYAVRYGLDTLILERNEERFRTHAQEVGVKTTITEVLSVRSEGTKKIITTDSGDLEAKAVIIATGANPKHLGVPGEKELISKGVSYCAICDGPFFRNKIVAVVGGGNSAVTDALFLSKVAQKVYLVHRRDHLKAARVLQDRVDGTPNIELILNSHVLEIVGTEGIKKVEKIILEDVNSRETRELSTNGVFIYVGIHPNTEFVDVEKDEGGFIKTDRWMETSEKGIYAAGDCRDTPIWQLVTAVRDGAIAATAAYEYIEKI 307
                                    11        21        31     || 67        77        87        97       107       117       127       137       147       157       167       177       187       197       207||     218       228       238       248       258       268       278       288       298         
                                                              37|                                                                                                                                             208|                                                                                                 
                                                               64                                                                                                                                              210                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh...eeee...hhhhhhh.eee...eeeeeee..eeeeee...eeee.eeee...eee...............ee......hhhhh..eeeee..hhhhhhhhhhhhh...eeeee........hhhhhhhhh....eeee..eeeeeeee.....eeeeeeee.....eeeee..eeee...eee...........................eee.............hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zn0 D   2 AYDLIIIGGGPAGLTAGIYAVRYGLDTLILERRTHAQEVGVKTTITEVLSVRSEGTKKIITTDSGDLEAKAVIIATGANPKHLGVPGEKELISKGVSYCAICDGPFFRNKIVAVVGGGNSAVTDALFLSKVAQKVYLVHRRDHLKAARVLQDRVDGTPNIELILNSHVLEIVGTRIKKVEKIILEDVNSRETRELSTNGVFIYVGIHPNTEFVDVEKDEGGFIKTDRWMETSEKGIYAAGDCRDTPIWQLVTAVRDGAIAATAAYEYIEK 306
                            ||      13        23        33 ||     74        84        94       104       114       124       134       144       154       164       174       184       194       204    || 216       226       236       246       256       266       276       286       296       306
                            2|                            35|                                                                                                                                           209|                                                                                              
                             5                             67                                                                                                                                            212
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZN0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZN0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZN0)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp B:189 - Gly B:190   [ RasMol ]  
    Gly A:190 - Thr A:191   [ RasMol ]  
    Gly B:211 - Ile B:212   [ RasMol ]  
    Gly C:211 - Ile C:212   [ RasMol ]  
 
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