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(-) Description

Title :  STRUCTURE OF THE FULL-LENGTH RESPONSE REGULATOR SPR1814 IN COMPLEX WITH A PHOSPHATE ANALOGUE AND B3C
 
Authors :  Y. M. Chi, A. Park
Date :  04 May 15  (Deposition) - 27 Apr 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Response Regulator, Dna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Park, J. H. Lee, Y. M. Chi, H. Park
Structural Characterization Of The Full-Length Response Regulator Spr1814 In Complex With A Phosphate Analogue Reveals A Novel Conformational Plasticity Of The Linker Region
Biochem. Biophys. Res. Commun. V. 473 625 2016
PubMed-ID: 27038544  |  Reference-DOI: 10.1016/J.BBRC.2016.03.144

(-) Compounds

Molecule 1 - RESPONSE REGULATOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RR11, SPR1814
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE (STRAIN ATCC BAA-255 / R6)
    Organism Taxid: 171101
    Strain: ATCC BAA-255 / R6

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
14QT1Ligand/Ion5-AMINO-2,4,6-TRIBROMOBENZENE-1,3-DIYL DIHYDROPEROXIDE
2BEF2Ligand/IonBERYLLIUM TRIFLUORIDE ION
3MG2Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:8 , ASP A:53 , GLU A:55 , BEF A:202 , HOH A:366 , HOH A:433binding site for residue MG A 201
2AC2SOFTWAREASP A:53 , VAL A:54 , GLU A:55 , THR A:81 , THR A:82 , PHE A:83 , LYS A:103 , MG A:201 , HOH A:366 , HOH A:433 , HOH A:460binding site for residue BEF A 202
3AC3SOFTWARELYS A:84 , ARG A:85 , ASP B:182binding site for residue 4QT A 203
4AC4SOFTWAREASP B:8 , ASP B:53 , GLU B:55 , BEF B:202 , HOH B:394 , HOH B:451binding site for residue MG B 201
5AC5SOFTWAREASP B:53 , VAL B:54 , GLU B:55 , THR B:81 , THR B:82 , PHE B:83 , LYS B:103 , MG B:201 , HOH B:394 , HOH B:451 , HOH B:478binding site for residue BEF B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZMS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZMS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZMS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZMS)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZMS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeee..hhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhh.....eeee.......hhhhhhhhhhhh....eeeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhhh...eehhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhh...hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zms A  -7 GLVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199
                                     2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       


Chain B from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..hhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhhhh...eeee.......hhhhhhhhhhhh....eeeeee...hhhhhhhhhhh...eeee...hhhhhhhhhhhhhh...eehhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zms B   0 HMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKEYSPELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZMS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZMS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZMS)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        Q8DNC2_STRR6 | Q8DNC2: 4e7o 4e7p 4hye 4zmr

(-) Related Entries Specified in the PDB File

4zmr