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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ORNITHINE AMINOTRANSFERASE FROM TOXOPLASMA GONDII ME49 IN A COMPLEX WITH THE SCHIFF BASE BETWEEN PLP AND LYS286
 
Authors :  E. V. Filippova, G. Minasov, K. Flores, H. Van Le, R. B. Silverman, R. Mc W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  01 May 15  (Deposition) - 20 May 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Pyridoxal 5'-Phosphate (Plp)-Independent Aminotransferase, Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. V. Filippova, G. Minasov, K. Flores, H. Van Le, R. B. Silverman, R. Mcleod, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of The Ornithine Aminotransferase From Toxoplasma Gondii Me49 In A Complex With The Schiff Base Between Plp And Lys286
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ORNITHINE AMINOTRANSFERASE, MITOCHONDRIAL, PUTATIVE
    ChainsA, B
    EC Number2.6.1.13
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPMCSG28
    Expression System StrainBL21(DE3)/PMAGIC
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneTGME49_269110
    Organism ScientificTOXOPLASMA GONDII ME49
    Organism Taxid508771

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric/Biological Unit (3, 9)
No.NameCountTypeFull Name
1PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
2PLP2Ligand/IonPYRIDOXAL-5'-PHOSPHATE
3SO46Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:136 , ALA A:137 , TYR A:171 , TRP A:172 , GLU A:224 , ASP A:257 , GLN A:260 , LYS A:286 , HOH A:613 , HOH A:674 , HOH A:719 , HOH A:756 , THR B:316 , HOH B:641binding site for residue PLP A 501
2AC2SOFTWAREARG A:404 , ARG A:406 , HOH A:796binding site for residue SO4 A 502
3AC3SOFTWAREASP A:204 , ASP A:205 , VAL A:206 , GLY A:207 , LYS A:236 , ARG A:242 , HOH A:646 , HOH A:671 , HOH A:709binding site for residue SO4 A 503
4AC4SOFTWAREARG A:351 , ARG A:355 , HOH A:703 , HOH A:773binding site for residue SO4 A 504
5AC5SOFTWAREASP B:204 , ASP B:205 , VAL B:206 , GLY B:207 , LYS B:236 , ARG B:242 , HOH B:657 , HOH B:676 , HOH B:682binding site for residue SO4 B 502
6AC6SOFTWAREARG B:404 , ARG B:406 , HOH B:709binding site for residue SO4 B 503
7AC7SOFTWAREARG B:351 , ARG B:355 , HOH B:623binding site for residue SO4 B 504
8AC8SOFTWARECYS B:179 , SER B:180 , SER B:182 , PHE B:194binding site for residue PEG B 505
9AC9SOFTWARETHR A:316 , HOH A:716 , VAL B:79 , SER B:80 , SER B:81 , GLY B:136 , ALA B:137 , TYR B:171 , TRP B:172 , GLU B:224 , ASP B:257 , ILE B:259 , GLN B:260 , GLY B:285 , SER B:287 , LEU B:288 , SER B:289 , HOH B:603 , HOH B:606 , HOH B:614 , HOH B:643 , HOH B:689 , HOH B:762binding site for Di-peptide PLP B 501 and LYS B 286

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:96 -B:96

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:192 -Pro A:193
2Gly B:192 -Pro B:193

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZLV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZLV)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZLV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:421
                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhh......eeeeeeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh........eee.hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhh........eeeee.......hhhhhhh..hhhhhh........eeee...hhhhhhhhh....eeeeee..............hhhhhhhhhhhhh..eeeee............hhhhhhh....eeeehhhhhh.....eeeeehhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..eeeeee.....hhhhhhhhhhhh.ee.......eeee......hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zlv A  19 KTNIEAYRDGLKLKTEEDFFACDRQYVCQNYAPVPVVISKGKGARVWDINGNEYYDFLAGVSSLSQGHCHPRVIAALCRQAERLTLTLRAFGNDVTGPACRFMAEMFGYDRVLLMNTGAEAGESALKIARKWAYEVKEIPPDSAKVILCNNNYWGRTITACSSSTTFDCYNNFGPFTPGFELIDYDDVGALEEALKDPNVAAFFVEPIQGEGGVNVPKPGYLKRAHELCRSKNVLLIVDEIQTGLCRTGRLLAADHDEVHPDILLLGKSLSAGVVPISAVMGRADVMDVLKPGTHGSTFGGNPLACAVAVEALTVLKDEKLADRAERLGAQFRDCLRRELYGKVPWIKEIRGRGLLNAVEVDSDAIDPNDVVMKLKENGILSKPTRGRVMRFIPPLVITDEEHRDATTRIIKSFLAVEEER 439
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438 

Chain B from PDB  Type:PROTEIN  Length:422
                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...hhhhhhhhhhhhh......eeeeeeeee..eeee....eeee.hhhhhh......hhhhhhhhhhhhh........eee.hhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhhhhhh........eeeee.......hhhhhhh..hhhhhh........eeee...hhhhhhhhh....eeeeee..............hhhhhhhhhhhhh..eeeee............hhhhhhh....eeeehhhhhh.....eeeeehhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..eeeeee.....hhhhhhhhhhhh.ee.......eeee......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zlv B  19 KTNIEAYRDGLKLKTEEDFFACDRQYVCQNYAPVPVVISKGKGARVWDINGNEYYDFLAGVSSLSQGHCHPRVIAALCRQAERLTLTLRAFGNDVTGPACRFMAEMFGYDRVLLMNTGAEAGESALKIARKWAYEVKEIPPDSAKVILCNNNYWGRTITACSSSTTFDCYNNFGPFTPGFELIDYDDVGALEEALKDPNVAAFFVEPIQGEGGVNVPKPGYLKRAHELCRSKNVLLIVDEIQTGLCRTGRLLAADHDEVHPDILLLGKSLSAGVVPISAVMGRADVMDVLKPGTHGSTFGGNPLACAVAVEALTVLKDEKLADRAERLGAQFRDCLRRELYGKVPWIKEIRGRGLLNAVEVDSDAIDPNDVVMKLKENGILSKPTRGRVMRFIPPLVITDEEHRDATTRIIKSFLAVEEERK 440
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438  

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZLV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZLV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZLV)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        S8EY38_TOXGM | S8EY384nog 4zwm 5dj9 5e3k 5e5i 5eav 5eqc

(-) Related Entries Specified in the PDB File

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