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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PMFTN VARIANT E44Q SOAKED IN IRON (45 MIN)
 
Authors :  S. Pfaffen, M. E. P. Murphy
Date :  30 Apr 15  (Deposition) - 30 Sep 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D,E,F,G,H  (3x)
Keywords :  Ferritin, Di-Iron Ferroxidase Centre, 4-Helix Bundle, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Pfaffen, J. M. Bradley, R. Abdulqadir, M. R. Firme, G. R. Moore, N. E. Le Brun, M. E. Murphy
A Diatom Ferritin Optimized For Iron Oxidation But Not Iron Storage.
J. Biol. Chem. V. 290 28416 2015
PubMed-ID: 26396187  |  Reference-DOI: 10.1074/JBC.M115.669713

(-) Compounds

Molecule 1 - FERRITIN
    Chains: A, D, B, C, E, F, G, H
    EC Number: 1.16.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FTN
    Mutation: YES
    Organism Scientific: PSEUDO-NITZSCHIA MULTISERIES
    Organism Taxid: 37319

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (3x): ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1FE16Ligand/IonFE (III) ION
2YCM8Mod. Amino AcidS-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1FE-1Ligand/IonFE (III) ION
2YCM24Mod. Amino AcidS-(2-AMINO-2-OXOETHYL)-L-CYSTEINE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:44 , GLU A:48 , GLU A:94 , FE A:202 , HOH A:331binding site for residue FE A 201
02AC2SOFTWAREGLU A:15 , GLU A:48 , HIS A:51 , ASN A:97 , FE A:201 , HOH A:331 , HOH A:345binding site for residue FE A 202
03AC3SOFTWAREGLU D:15 , GLU D:48 , HIS D:51 , HOH D:303 , HOH D:328binding site for residue FE D 201
04AC4SOFTWAREGLN D:44 , GLU D:48 , GLU D:94 , HOH D:303binding site for residue FE D 202
05AC5SOFTWAREGLU B:15 , GLU B:48 , HIS B:51 , FE B:202 , HOH B:310 , HOH B:319binding site for residue FE B 201
06AC6SOFTWAREGLU B:48 , GLU B:94 , ASN B:97 , GLN B:127 , FE B:201 , HOH B:301 , HOH B:310binding site for residue FE B 202
07AC7SOFTWAREGLU C:48 , GLU C:94 , ASN C:97 , FE C:202 , HOH C:303binding site for residue FE C 201
08AC8SOFTWAREGLU C:15 , GLU C:48 , HIS C:51 , ASN C:97 , FE C:201 , HOH C:303 , HOH C:331binding site for residue FE C 202
09AC9SOFTWAREGLU E:48 , GLU E:94 , ASN E:97 , GLN E:127 , FE E:202 , HOH E:301 , HOH E:312binding site for residue FE E 201
10AD1SOFTWAREGLU E:15 , GLU E:48 , HIS E:51 , FE E:201 , HOH E:312 , HOH E:318binding site for residue FE E 202
11AD2SOFTWAREGLU F:15 , GLU F:48 , HIS F:51 , FE F:202 , HOH F:305 , HOH F:317binding site for residue FE F 201
12AD3SOFTWAREGLU F:48 , GLU F:94 , ASN F:97 , GLN F:127 , FE F:201 , HOH F:305binding site for residue FE F 202
13AD4SOFTWAREGLU G:15 , GLU G:48 , HIS G:51 , FE G:202 , HOH G:308 , HOH G:358binding site for residue FE G 201
14AD5SOFTWAREGLU G:48 , GLU G:94 , ASN G:97 , GLN G:127 , FE G:201 , HOH G:301 , HOH G:308binding site for residue FE G 202
15AD6SOFTWAREGLU H:15 , GLU H:48 , HIS H:51 , ASN H:97 , FE H:202 , HOH H:316 , HOH H:326binding site for residue FE H 201
16AD7SOFTWAREGLU H:48 , GLU H:94 , ASN H:97 , GLN H:127 , FE H:201 , HOH H:301 , HOH H:316binding site for residue FE H 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZKW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val E:157 -Ser E:158

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZKW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZKW)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZKW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw A   2 EELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVS 158
                                    11        21        31        41        51        61        71     |  81        91       101       111       121       131       141       151       
                                                                                                      77-YCM                                                                             


Chain B from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw B   1 SEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSF 159
                                    10        20        30        40        50        60        70      | 80        90       100       110       120       130       140       150         
                                                                                                       77-YCM                                                                              


Chain C from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw C   2 EELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVS 158
                                    11        21        31        41        51        61        71     |  81        91       101       111       121       131       141       151       
                                                                                                      77-YCM                                                                             


Chain D from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw D   2 EELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSF 159
                                    11        21        31        41        51        61        71     |  81        91       101       111       121       131       141       151        
                                                                                                      77-YCM                                                                              


Chain E from PDB  Type:PROTEIN  Length:157
                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw E   2 EELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVS 158
                                    11        21        31        41        51        61        71     |  81        91       101       111       121       131       141       151       
                                                                                                      77-YCM                                                                             


Chain F from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw F   2 EELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSF 159
                                    11        21        31        41        51        61        71     |  81        91       101       111       121       131       141       151        
                                                                                                      77-YCM                                                                              


Chain G from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw G   2 EELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSF 159
                                    11        21        31        41        51        61        71     |  81        91       101       111       121       131       141       151        
                                                                                                      77-YCM                                                                              


Chain H from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkw H   1 SEELLDLFNRQVTQEFTASQVYLSASIWFDQNDWEGMAAYMLAQSAEEREHGLGFVDFANKRNIPIELQAVPAPVScAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLNPFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSF 159
                                    10        20        30        40        50        60        70      | 80        90       100       110       120       130       140       150         
                                                                                                       77-YCM
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZKW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZKW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZKW)

(-) Gene Ontology  (8, 8)

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 Related Entries

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        B6DMH6_9STRA | B6DMH6: 3e6r 3e6s 4ism 4isp 4itt 4itw 4iwj 4iwk 4ixk 4zkh 4zkx 4zl5 4zl6 4zlw 4zmc

(-) Related Entries Specified in the PDB File

4zkh 4zkx 4zl5 4zl6