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(-) Description

Title :  VIRAL CHEMOKINE BINDING PROTEIN R17 ENCODED BY RODENT GAMMAHERPESVIRUS PERU ( RHVP)
 
Authors :  O. Y. Lubman, D. H. Fremont
Date :  30 Apr 15  (Deposition) - 18 Nov 15  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Chemokine Binding Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  O. Y. Lubman, D. H. Fremont
Parallel Evolution Of Chemokine Binding By Structurally Related Herpesvirus Decoy Receptors.
Structure V. 24 57 2016
PubMed-ID: 26671708  |  Reference-DOI: 10.1016/J.STR.2015.10.018

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: MAMMALIAN EXPRESSION VECTOR PBGSA
    Expression System Cell Line: 293F
    Expression System Organ: KIDNEY
    Expression System Taxid: 285261
    Gene: RHVP-L.R17, RHVP.R17
    Organism Scientific: CRICETID HERPESVIRUS 2
    Organism Taxid: 1605972

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:205 , PHE A:244 , HOH A:654 , HOH A:737 , HOH A:740binding site for Poly-Saccharide residues NAG A 501 through NAG A 502 bound to ASN A 205

(-) SS Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1A:52 -A:177
2A:81 -A:84
3A:96 -A:160
4A:197 -A:208
5A:223 -A:278
6A:326 -A:347

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Leu A:38 -Pro A:39

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZKQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZKQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZKQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:388
                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeee................hhhhhhhhhh.eeeeee...eee..eeeeeee..........eeeeeeeeee........hhhhheeee..eeee..eeeeee......eeeeeeeeeeee...eeeeee...hhhh.eeeeeeeee.....eeeeeee........eeeeee........eeeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeeeeeee...............eeee.....................ee...eeeeeee.hhhhh.....eeeeeeee........eeeeeee..........ee.......eeeeee....eeeeeee...........eeeeeee...eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zkq A  14 ASKVSSRLLTQDILFRKDRQATISLPIKLPVEDIITQTCDKITYGPLKFLDLLEKETAVLPLSTDITCPACLGRAVLVGKWECPAHVAVNESDLTVFGPNKEEHVPQFVTVQQPSDGKMQRLFFAKFLGTEESLAVLRVPGPDGHLCIQEALIHFKELSGAGVCSLWKANDSREEGLEMKQVDCLETTVLENQTCIATTLSKKIYHRLYCGERLMTGGQVSTRVLLTALGFYKRQPYTFHRVPKGMVYVHLIDSGSEDYMEYSECEEVTPGRYEDKQISYTFYTDLFQTADGEPVLASVWGTSGLKDSAYESCAFVIPTKGRRKLVPRRIMSKCYPFRLTYHPSTMTVRLDVRVEKHHGATDQGFVFLKMESGTYSEGREYYLDRVLW 401
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZKQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZKQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZKQ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4ZKQ)

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  Cis Peptide Bonds
    Leu A:38 - Pro A:39   [ RasMol ]  
 

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  4zkq
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        E9M5R0_9GAMA | E9M5R0: 4zlt

(-) Related Entries Specified in the PDB File

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