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(-) Description

Title :  HIGH RESOLUTION CRYSTAL STRUCTURE OF FOX1 RRM
 
Authors :  M. Blatter, F. H. -T. Allain
Date :  30 Apr 15  (Deposition) - 29 Jun 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Rrm Rna Binding, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Blatter, F. H. -T. Allain
High Resolution Crystal Structure Of Fox1 Rrm
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - RNA BINDING PROTEIN FOX-1 HOMOLOG 1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PTYB11
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 109-208
    Gene: RBFOX1, A2BP, A2BP1, FOX1, HRNBP1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ATAXIN-2-BINDING PROTEIN 1,FOX-1 HOMOLOG A, HEXARIBONUCLEOTIDE-BINDING PROTEIN 1

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric Unit (3, 12)
No.NameCountTypeFull Name
1MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PG41Ligand/IonTETRAETHYLENE GLYCOL
3SO47Ligand/IonSULFATE ION
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PG4-1Ligand/IonTETRAETHYLENE GLYCOL
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PG4-1Ligand/IonTETRAETHYLENE GLYCOL
3SO43Ligand/IonSULFATE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PG4-1Ligand/IonTETRAETHYLENE GLYCOL
3SO4-1Ligand/IonSULFATE ION
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PG41Ligand/IonTETRAETHYLENE GLYCOL
3SO41Ligand/IonSULFATE ION
Biological Unit 5 (2, 2)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PG4-1Ligand/IonTETRAETHYLENE GLYCOL
3SO41Ligand/IonSULFATE ION
Biological Unit 6 (2, 2)
No.NameCountTypeFull Name
1MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
2PG4-1Ligand/IonTETRAETHYLENE GLYCOL
3SO41Ligand/IonSULFATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:18 , ARG A:21 , GLY A:46 , SER A:47 , HOH A:303 , ARG B:63 , GLU B:66 , LYS B:67binding site for residue SO4 A 201
02AC2SOFTWAREGLU A:74 , GLY A:75 , ARG A:76 , GLY B:30 , GLN B:31 , PHE B:32 , ASP B:60 , SO4 B:201 , HOH B:361binding site for residue MES A 202
03AC3SOFTWAREPRO A:17 , PHE A:18 , ARG A:19 , ARG A:76 , MES A:202 , HOH A:322 , ARG B:63 , HOH B:325 , HOH B:334binding site for residue SO4 B 201
04AC4SOFTWAREPHE B:18 , ARG B:19 , ARG B:21 , GLY B:46 , SER B:47 , HOH B:301 , HOH B:311 , GLU C:74 , GLY C:75binding site for residue SO4 B 202
05AC5SOFTWAREARG B:45 , HOH B:303 , LYS D:34 , GLU D:56binding site for residue SO4 B 203
06AC6SOFTWARELYS B:5 , LYS C:9 , ASP C:62 , ASN C:82 , HOH C:301binding site for residue MES C 201
07AC7SOFTWAREPHE D:18 , ARG D:21 , GLY D:46 , SER D:47 , HOH D:306 , ARG E:63 , GLU E:66 , LYS E:67binding site for residue SO4 D 201
08AC8SOFTWAREASN D:15 , GLY D:75 , ARG D:76 , GLN E:31 , PHE E:32 , ASP E:60 , SO4 E:201 , HOH E:347binding site for residue PG4 D 202
09AC9SOFTWAREPRO D:17 , PHE D:18 , ARG D:19 , ARG D:76 , PG4 D:202 , HOH D:305 , HOH D:319 , ARG E:63 , HOH E:324 , HOH E:333binding site for residue SO4 E 201
10AD1SOFTWAREPRO E:17 , PHE E:18 , ARG E:19 , ARG E:76binding site for residue MES E 202
11AD2SOFTWAREPRO F:17 , PHE F:18 , ARG F:76 , HOH F:306 , HOH F:308 , HOH F:319binding site for residue SO4 F 201
12AD3SOFTWAREHOH E:353 , PHE F:18 , ARG F:45 , HOH F:301 , HOH F:310 , HOH F:311 , HOH F:314 , HOH F:341binding site for residue MES F 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZKA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZKA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZKA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZKA)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZKA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:83
                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee......hhhhhhhhhhh...eeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  4zka A  3 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 85
                                    12        22        32        42        52        62        72        82   


Chain B from PDB  Type:PROTEIN  Length:83
                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eeeeee......hhhhhhhhhhh...eeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  4zka B  3 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 85
                                    12        22        32        42        52        62        72        82   


Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                            
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee......hhhhhhhhhhh...eeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                  4zka C  7 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 83
                                    16        26        36        46        56        66        76       


Chain D from PDB  Type:PROTEIN  Length:82
                                                                                                                 
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee......hhhhhhhhhhhhh.eeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  4zka D  4 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 85
                                    13        23        33        43        53        63        73        83  


Chain E from PDB  Type:PROTEIN  Length:80
                                                                                                               
               SCOP domains -------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhh.eeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                  4zka E  5 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 84
                                    14        24        34        44        54        64        74        84


Chain F from PDB  Type:PROTEIN  Length:79
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee......hhhhhhhhhhh...eeeeeeeee..eeeeeeeeee.hhhhhhhhhhhhh..ee..ee.eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                  4zka F  6 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 84
                                    15        25        35        45        55        65        75
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZKA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZKA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZKA)

(-) Gene Ontology  (15, 15)

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        RFOX1_HUMAN | Q9NWB1: 2err 2n82

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