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(-) Description

Title :  STRUCTURAL AND FUNCTIONAL INSIGHTS INTO SURVIVAL ENDONUCLEASE, AN IMPORTANT VIRULENCE FACTOR OF BRUCELLA ABORTUS
 
Authors :  K. F. Tarique, S. A. Abdul Rehman, S. Devi, S. Gourinath
Date :  22 Apr 15  (Deposition) - 06 May 15  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,C,D,G
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. F. Tarique, S. A. Abdul Rehman, S. Devi, P. Tomar, S. Gourinath
Structural And Functional Insights Into The Stationary-Phas Survival Protein Sure, An Important Virulence Factor Of Brucella Abortus
Acta Crystallogr. , Sect. F V. 72 386 2016
PubMed-ID: 27139831  |  Reference-DOI: 10.1107/S2053230X16005999

(-) Compounds

Molecule 1 - 5'-NUCLEOTIDASE SURE
    Chains: D, A, C, G
    EC Number: 3.1.3.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SURE, BABS19_I08450
    Organism Scientific: BRUCELLA ABORTUS S19
    Organism Taxid: 430066
    Strain: S19
    Synonym: SURVIVAL ENDONUCLEASE,NUCLEOSIDE 5'-MONOPHOSPHATE PHOSPHOHYDROLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ACDG

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP D:8 , ASP D:9 , ASN D:92 , HOH D:424 , HOH D:425 , HOH D:438binding site for residue MG D 301
2AC2SOFTWAREASP A:8 , ASP A:9 , ASN A:92 , HOH A:402 , HOH A:407 , HOH A:415binding site for residue MG A 301
3AC3SOFTWAREASP C:8 , ASP C:9 , ASN C:92 , HOH C:418 , HOH C:423 , HOH C:428binding site for residue MG C 301
4AC4SOFTWAREASP G:8 , ASP G:9 , ASN G:92 , HOH G:403 , HOH G:414 , HOH G:422binding site for residue MG G 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZG5)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Gly D:90 -Val D:91
2Gly A:90 -Val A:91
3Gly A:248 -Ala A:249
4Gly C:90 -Val C:91
5Gly C:248 -Ala C:249
6Gly G:90 -Val G:91
7Gly G:248 -Ala G:249

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZG5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZG5)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZG5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......hhhhhhhhhhhhhhh.eeeeeee..................eeeee..eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhh.eeee.........eeeeeee.....eeeeeee..........hhhhhhhh.eeeeeeee....hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zg5 A   1 MRILLTNDDGIHAEGLAVLERIARKLSDDVWVVAPETDQSGLAHSLTLLEPLRLRQIDARHFALRGTPTDCVIMGVRHVLPGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYRRIVPWETAEAHAPELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQGKLSHDARLDERRDGRGFPYFWLHFGRGKAPVADDSDIAAIRSGCISMTPLHLDLTAHKVRAELGAA 250
                                    10        20        30        40        50        60        70        80        90       100       110       120       133       143       153       163       173       183       193       203       213       223       233       243       
                                                                                                                                                          129|                                                                                                                     
                                                                                                                                                           133                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhhhhhhhh..eeeeee..................eeeee..eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhhhhhh...eeeeee..eee..eee.hhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhh.eeee........eeeeeeee.....eeeeeeee.........hhhhhhhh.eeeeeeee....hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zg5 C   1 MRILLTNDDGIHAEGLAVLERIARKLSDDVWVVAPETDQSGLAHSLTLLEPLRLRQIDARHFALRGTPTDCVIMGVRHVLPGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWETAEAHAPELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQGKLSHDARLDERRDGRGFPYFWLHFGRGKAPVADDSDIAAIRSGCISMTPLHLDLTAHKVRAELGA 249
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240         


Chain D from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhhhhhhhh..eeeeee.................eeeeee..eeeee.hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhhhhhh...eeeeee..eee..eee.hhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhh.eeee.........eeeeeee.....eeeeeee..........hhhhhhhh.eeeeeeee....hhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zg5 D   1 MRILLTNDDGIHAEGLAVLERIARKLSDDVWVVAPETDQSGLAHSLTLLEPLRLRQIDARHFALRGTPTDCVIMGVRHVLPGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYEYAGDRRIVPWETAEAHAPELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQGKLSHDARLDERRDGRGFPYFWLHFGRGKAPVADDSDIAAIRSGCISMTPLHLDLTAHKVRAELGAALG 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  


Chain G from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee......hhhhhhhhhhhhhhh..eeeeee..................eeeee..eeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh.....eeeeeee...hhhhh.eeee.........eeeeeee.....eeeeeee..........hhhhhhhh.eeeeeeee....hhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zg5 G   1 MRILLTNDDGIHAEGLAVLERIARKLSDDVWVVAPETDQSGLAHSLTLLEPLRLRQIDARHFALRGTPTDCVIMGVRHVLPGAPDLVLSGVNSGANMADDVTYSGTVAGAMEGTLLGVRAIALSQEYERIVPWETAEAHAPELIGRLMEAGWPEGVLLNLNFPNCAPEEVKGVRVTAQGKLSHDARLDERRDGRGFPYFWLHFGRGKAPVADDSDIAAIRSGCISMTPLHLDLTAHKVRAELGAALG 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       135       145       155       165       175       185       195       205       215       225       235       245       
                                                                                                                                                         128|                                                                                                                      
                                                                                                                                                          134
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZG5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZG5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZG5)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:248 - Ala A:249   [ RasMol ]  
    Gly A:90 - Val A:91   [ RasMol ]  
    Gly C:248 - Ala C:249   [ RasMol ]  
    Gly C:90 - Val C:91   [ RasMol ]  
    Gly D:90 - Val D:91   [ RasMol ]  
    Gly G:248 - Ala G:249   [ RasMol ]  
    Gly G:90 - Val G:91   [ RasMol ]  
 

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