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(-) Description

Title :  PHOTOTOXIC FLUORESCENT PROTEIN KILLERORANGE
 
Authors :  N. V. Pletneva, V. Z. Pletnev, S. Pletnev
Date :  21 Apr 15  (Deposition) - 23 Dec 15  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.01
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,E  (1x)
Biol. Unit 3:  C  (2x)
Keywords :  Fluorescent Protein, Genetically Encoded Photosensitizer, Chromophore-Assisted Light Inactivation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. V. Pletneva, V. Z. Pletnev, K. S. Sarkisyan, D. A. Gorbachev, E. S. Egorov, A. S. Mishin, K. A. Lukyanov, Z. Dauter, S. Pletnev
Crystal Structure Of Phototoxic Orange Fluorescent Proteins With A Tryptophan-Based Chromophore.
Plos One V. 10 45740 2015
PubMed-ID: 26699366  |  Reference-DOI: 10.1371/JOURNAL.PONE.0145740

(-) Compounds

Molecule 1 - KILLERORANGE
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: JM109
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: HYDROZOA
    Organism Taxid: 6074

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): A  D 
Biological Unit 2 (1x):  B  E
Biological Unit 3 (2x):   C  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
14M95Mod. Amino Acid(4Z)-4-IMINO-4-[(4Z)-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-1-(2-OXOETHYL)-4,5-DIHYDRO-1H-IMIDAZOL-2-YL]BUTANAMIDE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
14M92Mod. Amino Acid(4Z)-4-IMINO-4-[(4Z)-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-1-(2-OXOETHYL)-4,5-DIHYDRO-1H-IMIDAZOL-2-YL]BUTANAMIDE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
14M92Mod. Amino Acid(4Z)-4-IMINO-4-[(4Z)-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-1-(2-OXOETHYL)-4,5-DIHYDRO-1H-IMIDAZOL-2-YL]BUTANAMIDE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
14M92Mod. Amino Acid(4Z)-4-IMINO-4-[(4Z)-4-(1H-INDOL-3-YLMETHYLIDENE)-5-OXO-1-(2-OXOETHYL)-4,5-DIHYDRO-1H-IMIDAZOL-2-YL]BUTANAMIDE

(-) Sites  (0, 0)

(no "Site" information available for 4ZFS)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZFS)

(-) Cis Peptide Bonds  (10, 10)

Asymmetric Unit
No.Residues
1Phe A:37 -Pro A:38
2Phe A:86 -Pro A:87
3Phe B:37 -Pro B:38
4Phe B:86 -Pro B:87
5Phe C:37 -Pro C:38
6Phe C:86 -Pro C:87
7Phe D:37 -Pro D:38
8Phe D:86 -Pro D:87
9Phe E:37 -Pro E:38
10Phe E:86 -Pro E:87

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZFS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZFS)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZFS)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh..eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........hhhhh....hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeee....eeeeeeeeeeee....eeeeeeeeeeee...........eeeeeeeeeee.......eeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zfs A   1 SECGPALFQSDMTFKIFIDGEVNGQKFTIVADGSSKFPHGDFNVHAVCETGKLPMSWKPICHLIxEPFFARYPDGISHFAQECFPEGLSIDRTVRFENDGTMTSHHTYELSDTCVVSRITVNCDGFQPDGPIMRDQLVDILPSETHMFPHGPNAVRQLAFIGFTTADGGLMMGHLDSKMTFNGSRAIEIPGPHFVTIITKQMRDTSDKRDHVCQREVAHAHSVPRITSAIGSDQ 236
                                    10        20        30        40        50        60    ||  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
                                                                                           65-4M9                                                                                                                                                                     
                                                                                            68                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh..eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........hhhhh....hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeee....eeeeeeeeeeee....eeeeeeeeeeee...........eeeeeeeeeeee......eeeeeeeeeee............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zfs B   1 SECGPALFQSDMTFKIFIDGEVNGQKFTIVADGSSKFPHGDFNVHAVCETGKLPMSWKPICHLIxEPFFARYPDGISHFAQECFPEGLSIDRTVRFENDGTMTSHHTYELSDTCVVSRITVNCDGFQPDGPIMRDQLVDILPSETHMFPHGPNAVRQLAFIGFTTADGGLMMGHLDSKMTFNGSRAIEIPGPHFVTIITKQMRDTSDKRDHVCQREVAHAHSVPRITSAIGSDQ 236
                                    10        20        30        40        50        60    ||  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
                                                                                           65-4M9                                                                                                                                                                     
                                                                                            68                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh..eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........hhhhh....hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeee....eeeeeeeeeeee....eeeeeeeeeeee...........eeeeeeeeeee.......eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zfs C   1 SECGPALFQSDMTFKIFIDGEVNGQKFTIVADGSSKFPHGDFNVHAVCETGKLPMSWKPICHLIxEPFFARYPDGISHFAQECFPEGLSIDRTVRFENDGTMTSHHTYELSDTCVVSRITVNCDGFQPDGPIMRDQLVDILPSETHMFPHGPNAVRQLAFIGFTTADGGLMMGHLDSKMTFNGSRAIEIPGPHFVTIITKQMRDTSDKRDHVCQREVAHAHSVPRITS 230
                                    10        20        30        40        50        60    ||  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
                                                                                           65-4M9                                                                                                                                                               
                                                                                            68                                                                                                                                                                  


Chain D from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh..eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........hhhhh....hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeee....eeeeeeeeeeee....eeeeeeeeeeee...........eeeeeeeeeee.......eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zfs D   1 SECGPALFQSDMTFKIFIDGEVNGQKFTIVADGSSKFPHGDFNVHAVCETGKLPMSWKPICHLIxEPFFARYPDGISHFAQECFPEGLSIDRTVRFENDGTMTSHHTYELSDTCVVSRITVNCDGFQPDGPIMRDQLVDILPSETHMFPHGPNAVRQLAFIGFTTADGGLMMGHLDSKMTFNGSRAIEIPGPHFVTIITKQMRDTSDKRDHVCQREVAHAHSVPRITS 230
                                    10        20        30        40        50        60    ||  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
                                                                                           65-4M9                                                                                                                                                               
                                                                                            68                                                                                                                                                                  


Chain E from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhh..eeeeeeeeeee..eeeeeeeeeee.....eeeeeeee........hhhhh....hhhhh.......hhhhhh....eeeeeeeee....eeeeeeeeeee..eeeeeeeeeee............eeee..eeeeeee....eeeeeeeeeeee....eeeeeeeeeeee...........eeeeeeeeeee.......eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4zfs E   1 SECGPALFQSDMTFKIFIDGEVNGQKFTIVADGSSKFPHGDFNVHAVCETGKLPMSWKPICHLIxEPFFARYPDGISHFAQECFPEGLSIDRTVRFENDGTMTSHHTYELSDTCVVSRITVNCDGFQPDGPIMRDQLVDILPSETHMFPHGPNAVRQLAFIGFTTADGGLMMGHLDSKMTFNGSRAIEIPGPHFVTIITKQMRDTSDKRDHVCQREVAHAHSVPRITS 230
                                    10        20        30        40        50        60    ||  72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222        
                                                                                           65-4M9                                                                                                                                                               
                                                                                            68
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZFS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZFS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZFS)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:37 - Pro A:38   [ RasMol ]  
    Phe A:86 - Pro A:87   [ RasMol ]  
    Phe B:37 - Pro B:38   [ RasMol ]  
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        Q2TCH5_9CNID | Q2TCH5: 2wiq 2wis 3a8s 3gb3 3gl4 3wck 4b30 4zbl

(-) Related Entries Specified in the PDB File

4zbl