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(-) Description

Title :  STRUCTURE OF THE ADENOVIRUS 14P1 KNOB DOMAIN
 
Authors :  P. Fender, C. Ducournau, C. Zubieta
Date :  17 Apr 15  (Deposition) - 09 Sep 15  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Adenovirus 14, Strain P1, Fibre Knob, Head Domain, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Wang, C. Ducournau, K. Saydaminova, M. Richter, R. Yumul, M. Ho, D. Carter, C. Zubieta, P. Fender, A. Lieber
Intracellular Signaling And Desmoglein 2 Shedding Triggered By Human Adenoviruses Ad3, Ad14, And Ad14P1.
J. Virol. V. 89 10841 2015
PubMed-ID: 26292319  |  Reference-DOI: 10.1128/JVI.01425-15

(-) Compounds

Molecule 1 - FIBER PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: KNOB DOMAIN, UNP RESIDUES 121-323
    Mutation: YES
    Organism Scientific: HUMAN ADENOVIRUS 14P1
    Organism Taxid: 814922

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4ZDG)

(-) Sites  (0, 0)

(no "Site" information available for 4ZDG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZDG)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZDG)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZDG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZDG)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZDG)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eee....................eeeeeeeeee..eeeeeeeeee.hhhhhhhhhh.eeeeeeeeee...................ee..ee......hhhhhh................eeeeeeee.....eeeeeeeeee..........eeeeeeeeee..................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zdg A 128 DDNINTLWTGVNPTEANCQMMDSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTYRNINFTAELFFDSAGNLLTSLSSLKTPLNHKSGQNMATGAITNAKSFMPSTTAYPFNNNSRENYIYGTCHYTASDHTAFPIDISVMLNQRAIRADTSYCIRITWSWNTGDAPEGQTSATTLVTSPFTFYYIREDD 323
                                   137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      


Chain B from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eee....................eeeeeeeeee..eeeeeeeeee.hhhhhhhhhh.eeeeeeeeee...................ee..ee......hhhhhh...............eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee..................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zdg B 128 DDNINTLWTGVNPTEANCQMMDSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTYRNINFTAELFFDSAGNLLTSLSSLKTPLNHKSGQNMATGAITNAKSFMPSTTAYPFNNNSRENYIYGTCHYTASDHTAFPIDISVMLNQRAIRADTSYCIRITWSWNTGDAPEGQTSATTLVTSPFTFYYIREDD 323
                                   137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317      


Chain C from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhh.eee....................eeeeeeeeee..eeeeeeeeee.hhhhhhhhhh.eeeeeeeeee...................ee..ee......hhhhhh................eeeeeeee.....eeeeeeeeee..........eeeeeeeeee..................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zdg C 128 DDNINTLWTGVNPTEANCQMMDSSESNDCKLILTLVKTGALVTAFVYVIGVSNNFNMLTTYRNINFTAELFFDSAGNLLTSLSSLKTPLNHKSGQNMATGAITNAKSFMPSTTAYPFNNNSRENYIYGTCHYTASDHTAFPIDISVMLNQRAIRADTSYCIRITWSWNTGDAPEGQTSATTLVTSPFTFYYIREDD 323
                                   137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZDG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZDG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZDG)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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(no "Cis Peptide Bonds" information available for 4zdg)
 

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 Related Entries

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