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(-) Description

Title :  STRUCTURE OF HUMAN ENOLASE 2 IN COMPLEX WITH SF2312
 
Authors :  P. G. Leonard, D. Maxwell, B. Czako, F. L. Muller
Date :  16 Apr 15  (Deposition) - 20 Jul 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Enolase Gamma, Glycolysis, Neuron Specific Enolase, Inhibitor, Lyase- Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. G. Leonard, N. Satani, D. Maxwell, Y. H. Lin, N. Hammoudi, Z. Peng, F. Pisaneschi, T. M. Link, G. R. Lee, D. Sun, B. A. Prasad, M. E. Di Francesco, B. Czako, J. M. Asara, Y. A. Wang, W. Bornmann, R. A. Depinho, F. L. Muller
Sf2312 Is A Natural Phosphonate Inhibitor Of Enolase.
Nat. Chem. Biol. V. 12 1053 2016
PubMed-ID: 27723749  |  Reference-DOI: 10.1038/NCHEMBIO.2195

(-) Compounds

Molecule 1 - GAMMA-ENOLASE
    Chains: A, B
    EC Number: 4.2.1.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PJL-H6
    Expression System Strain: ROSETTA2 PLYSS
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: ENO2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE, ENOLASE 2, NEURAL ENOLASE, NEURON-SPECIFIC ENOLASE, NSE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
14NG2Ligand/Ion[(3S,5S)-1,5-DIHYDROXY-2-OXOPYRROLIDIN-3-YL]PHOSPHONICACID
2MG4Ligand/IonMAGNESIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:38 , ALA A:39 , SER A:40 , GLN A:166 , GLU A:167 , GLU A:210 , ASP A:245 , GLU A:293 , ASP A:318 , LEU A:341 , LYS A:343 , HIS A:371 , ARG A:372 , SER A:373 , LYS A:394 , MG A:502 , MG A:503 , HOH A:642 , HOH A:681binding site for residue 4NG A 501
2AC2SOFTWAREASP A:245 , GLU A:293 , ASP A:318 , 4NG A:501 , HOH A:619binding site for residue MG A 502
3AC3SOFTWARESER A:40 , 4NG A:501 , HOH A:642 , HOH A:681binding site for residue MG A 503
4AC4SOFTWAREGLY B:38 , ALA B:39 , SER B:40 , GLN B:166 , GLU B:167 , GLU B:210 , ASP B:245 , GLU B:293 , ASP B:318 , LEU B:341 , LYS B:343 , HIS B:371 , ARG B:372 , SER B:373 , LYS B:394 , MG B:502 , MG B:503 , HOH B:676 , HOH B:703binding site for residue 4NG B 501
5AC5SOFTWARESER B:40 , 4NG B:501 , HOH B:676 , HOH B:703binding site for residue MG B 502
6AC6SOFTWAREASP B:245 , GLU B:293 , ASP B:318 , LYS B:394 , 4NG B:501 , HOH B:639binding site for residue MG B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4ZCW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4ZCW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4ZCW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4ZCW)

(-) Exons   (0, 0)

(no "Exon" information available for 4ZCW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:433
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee.....eeeeeeeee..eeeeee.....................hhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.......ee.eeeee............eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhh......eeeee.hhhh.ee..ee........hhhhh.hhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhh...eeee......hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zcw A   2 SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNPSVL 434
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431   


Chain B from PDB  Type:PROTEIN  Length:433
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....eeeeeeeee..eeeeee.....................hhhhh.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.......ee.eeeee............eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhh......eeeee.hhhh.ee..ee........hhhhh.hhhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhh...eeee......hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh..eeeee........hhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4zcw B   2 SIEKIWAREILDSRGNPTVEVDLYTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHINSTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERELPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDEARFAGHNFRNPSVL 434
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4ZCW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4ZCW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4ZCW)

(-) Gene Ontology  (20, 20)

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  4zcw
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  4.2.1.11
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENOG_HUMAN | P09104: 1te6 2akm 2akz 3ucc 3ucd 3uje 3ujf 3ujr 3ujs 4za0 5eu9 5idz

(-) Related Entries Specified in the PDB File

4za0 ENOLASE-2 COMPLEXED WITH PHOSPHONOACETOHYDROXAMATE