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(-) Description

Title :  SH3-III OF DROSOPHILA RIM-BINDING PROTEIN BOUND TO A CACOPHONY DERIVED PEPTIDE
 
Authors :  J. H. Driller, N. Holton, M. Siebert, A. M. Boehme, M. C. Wahl, S. J. Sigri
Date :  08 Apr 15  (Deposition) - 05 Aug 15  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Synapse, Active Zone, Sh3 Domain, Rim-Binding Protein, Cacophony Peptide (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Siebert, M. A. Bohme, J. H. Driller, H. Babikir, M. M. Mampell, U. Rey N. Ramesh, T. Matkovic, N. Holton, S. Reddy-Alla, F. Gottfert, D. Kamin, C. Quentin, S. Klinedinst, T. F. Andlauer, S. W. Hell, C. A. Collins, M. C. Wahl, B. Loll, S. J. Sigrist
A High Affinity Rim-Binding Protein/Aplip1 Interaction Prevents The Formation Of Ectopic Axonal Active Zones.
Elife V. 4 2015
PubMed-ID: 26274777  |  Reference-DOI: 10.7554/ELIFE.06935

(-) Compounds

Molecule 1 - RIM-BINDING PROTEIN, ISOFORM F
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX6P1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1443-1507
    Gene: RBP, DMEL_CG43073
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
 
Molecule 2 - VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 1688-1702
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227
    Other Details: N-TERMINUS IS ACETYLATED, C-TERMINUS IS AMIDATED
    Synonym: PROTEIN CACOPHONY,PROTEIN NIGHTBLIND A,PROTEIN NO-ON- TRANSIENT B,DMCA1A
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 4Z8A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z8A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z8A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z8A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z8A)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z8A)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
                                                                                                            
               SCOP domains --------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee.....hhhhhh...hhhhhh.......eeeee.......eeeeee..eeeeee.hhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------- Transcript
                4z8a A 1433 GPLGSPEFNRPVKRMIALYDYDPQELSPNVDAEQVELCFKTGEIILVYGDMDEDGFYMGELDGVRGLVPSNFLAD 1507
                                  1442      1452      1462      1472      1482      1492      1502     


Chain B from PDB  Type:PROTEIN  Length:17
                                                  
               SCOP domains ----------------- SCOP domains
               CATH domains ----------------- CATH domains
               Pfam domains ----------------- Pfam domains
         Sec.struct. author ................. Sec.struct. author
                 SAPs(SNPs) ----------------- SAPs(SNPs)
                    PROSITE ----------------- PROSITE
                 Transcript ----------------- Transcript
                4z8a B 1684 xIGRRLPPTPSKPSTLx 1700
                            |     1693      |
                         1684-ACE        1700-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z8A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z8A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z8A)

(-) Gene Ontology  (40, 40)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CAC1A_DROME | P91645: 4z89
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        A0A0B4JDC9_D | A0A0B4JDC9: 4z88 4z89

(-) Related Entries Specified in the PDB File

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