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(-) Description

Title :  MDBA PROTEIN, A THIOL-DISULFIDE OXIDOREDUCTASE FROM ACTINOMYCES ORIS.
 
Authors :  J. Osipiuk, M. E. Reardon-Robinson, H. Ton-That, A. Joachimiak, Midwe For Structural Genomics (Mcsg)
Date :  08 Apr 15  (Deposition) - 22 Apr 15  (Release) - 09 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Thiol-Disulfide Oxidoreductase, Structural Genomics, Midwest Center For Structural Genomics, Mcsg, Psi-Biology, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Reardon-Robinson, J. Osipiuk, C. Chang, C. Wu, N. Jooya, A. Joachimiak, A. Das, H. Ton-That
A Disulfide Bond-Forming Machine Is Linked To The Sortase-Mediated Pilus Assembly Pathway In The Gram-Positiv Bacterium Actinomyces Oris.
J. Biol. Chem. V. 290 21393 2015
PubMed-ID: 26170452  |  Reference-DOI: 10.1074/JBC.M115.672253

(-) Compounds

Molecule 1 - MDBA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MDBA, ANA_1994
    Organism Scientific: ACTINOMYCES ORIS
    Organism Taxid: 544580

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric Unit (2, 8)
No.NameCountTypeFull Name
13CX2Ligand/Ion(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONICACID
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
13CX1Ligand/Ion(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONICACID
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
13CX1Ligand/Ion(2S)-3-(CYCLOHEXYLAMINO)-2-HYDROXYPROPANE-1-SULFONICACID
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:106 , THR A:114 , TYR A:115 , GLY A:116 , GLU A:117 , GLY A:118 , PRO A:192 , SER A:195 , HOH A:662binding site for residue 3CX A 501
2AC2SOFTWAREGLN B:106 , THR B:114 , TYR B:115 , GLY B:116 , GLU B:117 , GLY B:118 , LEU B:188 , PRO B:192 , SER B:195binding site for residue 3CX B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z7X)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Thr A:268 -Pro A:269
2Thr B:268 -Pro B:269

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z7X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z7X)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z7X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:211
                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh....................eee.......hhhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......eeee..ee.hhhhh...hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z7x A  86 FPAPSEGLATAKANQGGIPKQVLSDASWTYGEGAALDTVAASAPVLDIYFDYSCSHCAQFEGLHTQEINQLLSDKKITLALHPCKLLQQEWTSVVmNAmGVVLDEAPAQSLSFHNAAFEIFSQAIQTKNQSNmTVEGLVAAAAKVNVPKEVSAKFKAAVDSDKYGKWVKLGDEAFKARELEGTPTVFFKGEKVDLNKLQTPTSLTELVTGS 296
                                    95       105       115       125       135       145       155       165       175     | 185       195       205       215  |    225       235       245       255       265       275       285       295 
                                                                                                                         181-MSE                              218-MSE                                                                          
                                                                                                                            184-MSE                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:208
                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh..................eee......eeeeee...hhhhhhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......eeee..ee.hhhhh...hhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z7x B  83 SSKFPAPSEGLAKANQGGIPKQVLSDASWTYGEGSAPVLDIYFDYSCSHCAQFEGLHTQEINQLLSDKKITLALHPCKLLQQEWTSVVmNAmGVVLDEAPAQSLSFHNAAFEIFSQAIQTKNQSNmTVEGLVAAAAKVNVPKEVSAKFKAAVDSDKYGKWVKLGDEAFKARELEGTPTVFFKGEKVDLNKLQTPTSLTELVTGSTPTA 300
                                    92||     104       114   ||  132       142       152       162       172       182 |     192       202       212     | 222       232       242       252       262       272       282       292        
                                     93|                   118|                                                   181-MSE                              218-MSE                                                                              
                                      96                    127                                                      184-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z7X)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z7X)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z7X)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4Z7X)

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