Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  ACTIVE SITE COMPLEX BAMBC OF BENZOYL COENZYME A REDUCTASE IN COMPLEX WITH 1,5 DIENOYL-COA
 
Authors :  T. Weinert, J. Kung, S. Weidenweber, S. Huwiler, M. Boll, U. Ermler
Date :  01 Apr 15  (Deposition) - 24 Jun 15  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.21
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Aromatics, Reductase, Benzoyl-Coa, Anaerobic, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Weinert, S. G. Huwiler, J. W. Kung, S. Weidenweber, P. Hellwig, H. J. Stark, T. Biskup, S. Weber, J. J. Cotelesage, G. N. George, U. Ermler, M. Boll
Structural Basis Of Enzymatic Benzene Ring Reduction.
Nat. Chem. Biol. V. 11 586 2015
PubMed-ID: 26120796  |  Reference-DOI: 10.1038/NCHEMBIO.1849

(-) Compounds

Molecule 1 - BENZOYL-COA REDUCTASE, PUTATIVE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: GEOBACTER METALLIREDUCENS
    Expression System Strain: GS-15
    Expression System Taxid: 269799
    Gene: BAMB-1, GMET_2087
    Organism Scientific: GEOBACTER METALLIREDUCENS GS-15
    Organism Taxid: 269799
 
Molecule 2 - IRON-SULFUR CLUSTER-BINDING OXIDOREDUCTASE, PUTATIVE BENZOYL-COA REDUCTASE ELECTRON TRANSFER PROTEIN
    Chains: E, F, G, H
    Engineered: YES
    Expression System: GEOBACTER METALLIREDUCENS
    Expression System Strain: GS-15
    Expression System Taxid: 269799
    Gene: BAMC-1, GMET_2086
    Organism Scientific: GEOBACTER METALLIREDUCENS GS-15
    Organism Taxid: 269799

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 40)

Asymmetric/Biological Unit (6, 40)
No.NameCountTypeFull Name
14KX4Ligand/Ion1,5 DIENOYL-COA
2MG4Ligand/IonMAGNESIUM ION
3MTE8Ligand/IonPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER
4SF416Ligand/IonIRON/SULFUR CLUSTER
5UNL4Ligand/IonUNKNOWN LIGAND
6W4Ligand/IonTUNGSTEN ION

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:76 , ARG A:77 , ARG A:181 , GLY A:247 , SER A:248 , CYS A:299 , CYS A:302 , MET A:304 , LYS A:305 , CYS A:306 , CYS A:534binding site for residue SF4 A 701
02AC2SOFTWAREARG A:77 , MET A:94 , MET A:95 , GLY A:96 , SER A:182 , SER A:183 , SER A:248 , LYS A:321 , CYS A:322 , GLN A:459 , ASP A:528 , ASP A:529 , GLN A:533 , CYS A:534 , ALA A:535 , MTE A:703 , W A:704 , MG A:705 , HOH A:807 , HOH A:815 , HOH A:823 , HOH A:853 , HOH A:866binding site for residue MTE A 702
03AC3SOFTWARESER A:93 , MET A:94 , GLU A:178 , SER A:183 , ALA A:184 , SER A:185 , ARG A:186 , LYS A:321 , CYS A:322 , PHE A:323 , LEU A:351 , ASP A:352 , GLY A:353 , PHE A:354 , LYS A:454 , THR A:458 , GLN A:459 , MTE A:702 , W A:704 , MG A:705 , HOH A:807 , HOH A:847 , HOH A:853binding site for residue MTE A 703
04AC4SOFTWARECYS A:322 , MTE A:702 , MTE A:703binding site for residue W A 704
05AC5SOFTWAREMET A:94 , SER A:183 , MTE A:702 , MTE A:703 , HOH A:807 , HOH A:853binding site for residue MG A 705
06AC6SOFTWAREPRO A:249 , TRP A:259 , HIS A:260 , PHE A:323 , LEU A:434 , LEU A:436 , LEU A:438 , SER A:439 , MET A:440 , TYR A:445 , THR A:458 , GLU A:461 , GLN A:466 , ARG A:500 , SER A:504 , MET A:505 , HOH A:811 , HOH A:865binding site for residue 4KX A 707
07AC7SOFTWAREASN B:76 , ARG B:77 , ARG B:181 , GLY B:247 , SER B:248 , CYS B:299 , CYS B:302 , MET B:304 , CYS B:306 , CYS B:534binding site for residue SF4 B 701
08AC8SOFTWAREARG B:77 , MET B:94 , MET B:95 , GLY B:96 , SER B:182 , SER B:183 , SER B:248 , LYS B:321 , CYS B:322 , GLN B:459 , ASP B:528 , ASP B:529 , GLN B:533 , CYS B:534 , ALA B:535 , MTE B:703 , W B:704 , MG B:705 , HOH B:807 , HOH B:821binding site for residue MTE B 702
09AC9SOFTWARESER B:93 , MET B:94 , SER B:176 , GLU B:178 , SER B:183 , ALA B:184 , SER B:185 , ARG B:186 , LYS B:321 , CYS B:322 , PHE B:323 , LEU B:351 , ASP B:352 , GLY B:353 , PHE B:354 , LYS B:454 , THR B:458 , GLN B:459 , MTE B:702 , W B:704 , MG B:705 , HOH B:804 , HOH B:829binding site for residue MTE B 703
10AD1SOFTWARECYS B:322 , MTE B:702 , MTE B:703binding site for residue W B 704
11AD2SOFTWAREMET B:94 , SER B:183 , MTE B:702 , MTE B:703 , HOH B:807 , HOH B:829binding site for residue MG B 705
12AD3SOFTWAREPRO B:249 , TRP B:259 , HIS B:260 , LEU B:434 , LEU B:436 , LEU B:438 , SER B:439 , MET B:440 , THR B:458 , GLU B:461 , GLN B:466 , ARG B:500 , SER B:504 , MET B:505binding site for residue 4KX B 707
13AD4SOFTWAREASN C:76 , ARG C:77 , ARG C:181 , GLY C:247 , SER C:248 , CYS C:299 , CYS C:302 , MET C:304 , CYS C:306 , CYS C:534binding site for residue SF4 C 701
14AD5SOFTWAREARG C:77 , MET C:94 , MET C:95 , GLY C:96 , SER C:182 , SER C:183 , SER C:248 , LYS C:321 , CYS C:322 , GLN C:459 , ASP C:529 , GLN C:533 , CYS C:534 , ALA C:535 , MTE C:703 , MG C:704 , W C:706 , HOH C:832 , HOH C:837 , HOH C:852 , HOH C:859 , HOH C:860binding site for residue MTE C 702
15AD6SOFTWARESER C:93 , MET C:94 , GLU C:178 , SER C:183 , SER C:185 , ARG C:186 , LYS C:321 , CYS C:322 , PHE C:323 , LEU C:351 , ASP C:352 , GLY C:353 , PHE C:354 , LYS C:454 , THR C:458 , GLN C:459 , MTE C:702 , MG C:704 , W C:706 , HOH C:820 , HOH C:837 , HOH C:848 , HOH C:860binding site for residue MTE C 703
16AD7SOFTWAREMET C:94 , SER C:183 , MTE C:702 , MTE C:703 , HOH C:837 , HOH C:860binding site for residue MG C 704
17AD8SOFTWARECYS C:322 , MTE C:702 , MTE C:703binding site for residue W C 706
18AD9SOFTWAREGLU C:251 , TRP C:259 , HIS C:260 , ARG C:272 , PHE C:323 , LEU C:436 , SER C:439 , MET C:440 , ASN C:442 , TYR C:445 , THR C:458 , GLU C:461 , GLN C:466 , PRO C:499 , ARG C:500 , SER C:504 , MET C:505binding site for residue 4KX C 707
19AE1SOFTWAREASN D:76 , ARG D:77 , ARG D:181 , GLY D:247 , SER D:248 , CYS D:299 , CYS D:302 , MET D:304 , LYS D:305 , CYS D:306 , CYS D:534binding site for residue SF4 D 702
20AE2SOFTWAREARG D:77 , MET D:94 , MET D:95 , GLY D:96 , SER D:182 , SER D:183 , SER D:248 , LYS D:321 , CYS D:322 , GLN D:459 , ASP D:528 , ASP D:529 , GLN D:533 , CYS D:534 , ALA D:535 , MTE D:704 , W D:705 , MG D:706 , HOH D:825 , HOH D:828 , HOH D:836 , HOH D:838binding site for residue MTE D 703
21AE3SOFTWARESER D:93 , MET D:94 , GLU D:178 , SER D:183 , ALA D:184 , SER D:185 , ARG D:186 , LYS D:321 , CYS D:322 , PHE D:323 , LEU D:351 , ASP D:352 , GLY D:353 , PHE D:354 , LYS D:454 , THR D:458 , GLN D:459 , MTE D:703 , W D:705 , MG D:706 , HOH D:803 , HOH D:820 , HOH D:836 , HOH D:838binding site for residue MTE D 704
22AE4SOFTWARECYS D:322 , MTE D:703 , MTE D:704binding site for residue W D 705
23AE5SOFTWAREMET D:94 , SER D:183 , MTE D:703 , MTE D:704 , HOH D:836 , HOH D:838binding site for residue MG D 706
24AE6SOFTWAREPRO D:249 , TRP D:259 , HIS D:260 , PHE D:323 , LEU D:434 , LEU D:436 , LEU D:438 , SER D:439 , MET D:440 , TYR D:445 , GLU D:461 , GLN D:466 , ARG D:500 , SER D:504 , MET D:505 , LYS D:601 , HOH D:806 , HOH D:844 , HOH D:849 , HOH D:854 , HOH D:857binding site for residue 4KX D 707
25AE7SOFTWARECYS E:20 , ASN E:21 , CYS E:23 , ARG E:24 , ALA E:25 , CYS E:26 , CYS E:128 , LEU E:133binding site for residue SF4 E 1001
26AE8SOFTWARECYS E:30 , HIS E:34 , VAL E:49 , TYR E:64 , CYS E:113 , ASP E:114 , LEU E:115 , CYS E:116 , CYS E:124binding site for residue SF4 E 1002
27AE9SOFTWARECYS E:73 , CYS E:89 , CYS E:92 , CYS E:96 , SER E:98 , ARG E:99 , GLU F:67binding site for residue SF4 E 1003
28AF1SOFTWARECYS F:20 , ASN F:21 , CYS F:23 , ARG F:24 , CYS F:26 , PRO F:62 , CYS F:128 , VAL F:130 , LEU F:133binding site for residue SF4 F 1001
29AF2SOFTWARECYS F:30 , HIS F:34 , TYR F:64 , CYS F:113 , LEU F:115 , CYS F:116 , CYS F:124binding site for residue SF4 F 1002
30AF3SOFTWAREGLU E:67 , ARG E:93 , CYS F:73 , CYS F:89 , CYS F:92 , CYS F:96 , ARG F:99binding site for residue SF4 F 1003
31AF4SOFTWARECYS G:20 , ASN G:21 , CYS G:23 , ARG G:24 , CYS G:26 , PRO G:62 , CYS G:128binding site for residue SF4 G 1001
32AF5SOFTWARECYS G:30 , HIS G:34 , VAL G:49 , TYR G:64 , CYS G:113 , LEU G:115 , CYS G:116 , PRO G:122 , CYS G:124binding site for residue SF4 G 1002
33AF6SOFTWARECYS G:73 , CYS G:89 , CYS G:92 , CYS G:96 , ARG G:99binding site for residue SF4 G 1003
34AF7SOFTWARECYS H:20 , ASN H:21 , CYS H:23 , ARG H:24 , CYS H:26 , PRO H:62 , CYS H:128 , LEU H:133binding site for residue SF4 H 1001
35AF8SOFTWARECYS H:30 , HIS H:34 , VAL H:49 , TYR H:64 , CYS H:113 , ASP H:114 , LEU H:115 , CYS H:116 , PRO H:122 , CYS H:124binding site for residue SF4 H 1002
36AF9SOFTWAREGLU G:67 , ARG G:93 , CYS H:73 , CYS H:89 , CYS H:92 , CYS H:96 , SER H:98 , ARG H:99binding site for residue SF4 H 1003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z3W)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Met A:505 -Pro A:506
2Phe A:508 -Pro A:509
3Met B:505 -Pro B:506
4Phe B:508 -Pro B:509
5Met C:505 -Pro C:506
6Phe C:508 -Pro C:509
7Met D:505 -Pro D:506
8Phe D:508 -Pro D:509
9Met E:36 -Pro E:37
10Met F:36 -Pro F:37
11Met G:36 -Pro G:37
12Met H:36 -Pro H:37

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z3W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z3W)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z3W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:652
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee....eeeeee.hhhhhhhhh.hhhhhhhhhhhhh............eeeee.............eeeeee......eeeeee..hhhhhhhhhh..eeeee......eeeeee..eeeeee.hhhh..hhhhhhhhhhhhhh....eeee.hhhhhh......eee..eee...hhhhhhhhh.eeeeeee....ee..hhhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhh.............hhhhhhhhhhhhhhheeeee.........eeee.......eee..hhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhh.hhhhh...ee..ee.....eee.hhhhhhhhhhh...hhhhh..........hhhhhhhhhhh......hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.hhhhh...........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhh......eee.hhhhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w A   1 MRYAETGYVLEVDLTKGSIERVATDPRDTELYLGGLGTNAKILWDRVPPEVEPFSPENLLIFAAGLLCGTPATGCNRTIVSTVSPQTKLMAFSMMGGFWAPELKYAGYDKIIFRGKSPELVYLYINNDKVEIRDASHLKGKGAIETAEIIKKELNEPRAQVAAIGKAGENRVFYASIEQGRSSASRGGIGAVMGDKGLKAVVVRGTKDLCVAKPEEYIGLCNEVLDYIKHREENPIPDVMPILAGLGSPQEMKVHDEKWHTENFNWGNARTRRKDFWTDEVSHAWEKTMDKARTRLISCYNCPMKCGATISMEGLPTYMMKCFTKLTYTMAAYSDLDFGLRIAQKATEYGLDGFSAPQVMAFAFELLEKGILKDSDFPGLPEGNEERFFYLLDKIVNRDGIGDILANGTYWAAQEIGNGAEDYAHNNIKKHEQLPLKLSMLNPIYYLMYCTGEKINITQIEGQFPQAPYPKLEQREAFVEDWIQVPDEKFKKIFLEWEPRGEKSMPNFPTVDMCCDIVDWQEMMHYIDDALGQCAGLSSFPLKPPYHIHNYPKFIAAGAGIEMDTEKLKKAAKRYRTLVRAFNIRRGMRRVDEQPPANHWKNRFPELEKELLDSYYKLKGWNDDGIPTKETLDDLGLGYVGDEFIKRGILSA 652
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650  


Chain B from PDB  Type:PROTEIN  Length:652
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee....eeeeee.hhhhhhhhh.hhhhhhhhhhhhh............eeeee.............eeeeee......eeeeee..hhhhhhhhhh..eeeee......eeeeee..eeeeee.hhhh..hhhhhhhhhhhhhh....eeee.hhhhhh......eee..eee...hhhhhhhhh.eeeeeee....ee..hhhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhh.............hhhhhhhhhhhhhhheeeee.........eeee.......eee..hhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhh..hhhhhhh.hhhhhhhhhh.hhhhh...ee..ee.....eee.hhhhhhhhhhh...hhhhh..........hhhhhhhhhhh......hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.hhhhh...........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhh......eee.hhhhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w B   1 MRYAETGYVLEVDLTKGSIERVATDPRDTELYLGGLGTNAKILWDRVPPEVEPFSPENLLIFAAGLLCGTPATGCNRTIVSTVSPQTKLMAFSMMGGFWAPELKYAGYDKIIFRGKSPELVYLYINNDKVEIRDASHLKGKGAIETAEIIKKELNEPRAQVAAIGKAGENRVFYASIEQGRSSASRGGIGAVMGDKGLKAVVVRGTKDLCVAKPEEYIGLCNEVLDYIKHREENPIPDVMPILAGLGSPQEMKVHDEKWHTENFNWGNARTRRKDFWTDEVSHAWEKTMDKARTRLISCYNCPMKCGATISMEGLPTYMMKCFTKLTYTMAAYSDLDFGLRIAQKATEYGLDGFSAPQVMAFAFELLEKGILKDSDFPGLPEGNEERFFYLLDKIVNRDGIGDILANGTYWAAQEIGNGAEDYAHNNIKKHEQLPLKLSMLNPIYYLMYCTGEKINITQIEGQFPQAPYPKLEQREAFVEDWIQVPDEKFKKIFLEWEPRGEKSMPNFPTVDMCCDIVDWQEMMHYIDDALGQCAGLSSFPLKPPYHIHNYPKFIAAGAGIEMDTEKLKKAAKRYRTLVRAFNIRRGMRRVDEQPPANHWKNRFPELEKELLDSYYKLKGWNDDGIPTKETLDDLGLGYVGDEFIKRGILSA 652
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650  


Chain C from PDB  Type:PROTEIN  Length:653
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee....eeeeee.hhhhhhhhhhhhhhhhhhhhhhh............eeeee.............eeeeee......eeeeee..hhhhhhhhhh..eeeee......eeeeee..eeeeee.hhhh..hhhhhhhhhhhhhh....eeee.hhhhhh......eee..eee...hhhhhhhhh.eeeeeee....ee..hhhhhhhhhhhhhhhhhhhhh......hhhhh............hhhhhhhh.............hhhhhhhhhhhhhhheeeee.........eeee.......eee..hhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhhh.hhhhhhh.hhhhhhhhhh..hhhhh..ee..ee.....eee.hhhhhhhhhhh...hhhhh..........hhhhhhhhhhh......hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.hhhhh...........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhh......eee.hhhhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w C   1 MRYAETGYVLEVDLTKGSIERVATDPRDTELYLGGLGTNAKILWDRVPPEVEPFSPENLLIFAAGLLCGTPATGCNRTIVSTVSPQTKLMAFSMMGGFWAPELKYAGYDKIIFRGKSPELVYLYINNDKVEIRDASHLKGKGAIETAEIIKKELNEPRAQVAAIGKAGENRVFYASIEQGRSSASRGGIGAVMGDKGLKAVVVRGTKDLCVAKPEEYIGLCNEVLDYIKHREENPIPDVMPILAGLGSPQEMKVHDEKWHTENFNWGNARTRRKDFWTDEVSHAWEKTMDKARTRLISCYNCPMKCGATISMEGLPTYMMKCFTKLTYTMAAYSDLDFGLRIAQKATEYGLDGFSAPQVMAFAFELLEKGILKDSDFPGLPEGNEERFFYLLDKIVNRDGIGDILANGTYWAAQEIGNGAEDYAHNNIKKHEQLPLKLSMLNPIYYLMYCTGEKINITQIEGQFPQAPYPKLEQREAFVEDWIQVPDEKFKKIFLEWEPRGEKSMPNFPTVDMCCDIVDWQEMMHYIDDALGQCAGLSSFPLKPPYHIHNYPKFIAAGAGIEMDTEKLKKAAKRYRTLVRAFNIRRGMRRVDEQPPANHWKNRFPELEKELLDSYYKLKGWNDDGIPTKETLDDLGLGYVGDEFIKRGILSAG 653
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650   


Chain D from PDB  Type:PROTEIN  Length:652
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeee....eeeeee.hhhhhhhhhhhhhhhhhhhhh..............eeeee.............eeeeee......eeeeee..hhhhhhhhhh..eeeee......eeeeee..eeeeee.hhhh..hhhhhhhhhhhhhh....eeee.hhhhhh......eee..eee...hhhhhhhhh.eeeeeee....ee..hhhhhhhhhhhhhhhhhhhhhh......................hhhhhhhh.............hhhhhhhhhhhhhhheeeee.........eeee.......eee..hhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh..ee..ee.....eee.hhhhhhhhhhh...hhhhh..........hhhhhhhhhh.......hhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhh.hhhhh...........hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhh......eee.hhhhhhhhhhhhhhhhh.......hhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w D   1 MRYAETGYVLEVDLTKGSIERVATDPRDTELYLGGLGTNAKILWDRVPPEVEPFSPENLLIFAAGLLCGTPATGCNRTIVSTVSPQTKLMAFSMMGGFWAPELKYAGYDKIIFRGKSPELVYLYINNDKVEIRDASHLKGKGAIETAEIIKKELNEPRAQVAAIGKAGENRVFYASIEQGRSSASRGGIGAVMGDKGLKAVVVRGTKDLCVAKPEEYIGLCNEVLDYIKHREENPIPDVMPILAGLGSPQEMKVHDEKWHTENFNWGNARTRRKDFWTDEVSHAWEKTMDKARTRLISCYNCPMKCGATISMEGLPTYMMKCFTKLTYTMAAYSDLDFGLRIAQKATEYGLDGFSAPQVMAFAFELLEKGILKDSDFPGLPEGNEERFFYLLDKIVNRDGIGDILANGTYWAAQEIGNGAEDYAHNNIKKHEQLPLKLSMLNPIYYLMYCTGEKINITQIEGQFPQAPYPKLEQREAFVEDWIQVPDEKFKKIFLEWEPRGEKSMPNFPTVDMCCDIVDWQEMMHYIDDALGQCAGLSSFPLKPPYHIHNYPKFIAAGAGIEMDTEKLKKAAKRYRTLVRAFNIRRGMRRVDEQPPANHWKNRFPELEKELLDSYYKLKGWNDDGIPTKETLDDLGLGYVGDEFIKRGILSA 652
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650  


Chain E from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhh......eehhhhh.eeeeeehhhheeeeee..........eeeeeee..ee....................................hhhhhhh....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w E   7 KRIVKTINIDADKCNGCRACEVICSAFHAMPPYSSNNPARSRVRVVRDPLRDIYVPLYAGEYTESECIGRDKFIIDGKEYDECGFCRASCPSRDLFREPDSGLPLKCDLCDGEPEPLCVKWCLVGALSVTEREVEEPRTEMEIGLESLISRFGADVVADTVEQ 174
                                    16        26        36        46        56        66        76        86        96       106       116       126       136      |151       161       171   
                                                                                                                                                                  143|                         
                                                                                                                                                                   149                         


Chain F from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhhh.....eehhhhh.eeeeeehhhheeeeee...........eeeeee..eeeee.................................hhhhhhh....eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w F   7 KRIVKTINIDADKCNGCRACEVICSAFHAMPPYSSNNPARSRVRVVRDPLRDIYVPLYAGEYTESECIGRDKFIIDGKEYDECGFCRASCPSRDLFREPDSGLPLKCDLCDGEPEPLCVKWCLVGALSVTEREVEEPDESVKRTEMEIGLESLISRFGADVVADTVEQLT 176
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176


Chain G from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhh......eehhhhh.eeeeeehhhheeeeee...........eeeeee..ee....................................hhhhhhh....eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w G   7 KRIVKTINIDADKCNGCRACEVICSAFHAMPPYSSNNPARSRVRVVRDPLRDIYVPLYAGEYTESECIGRDKFIIDGKEYDECGFCRASCPSRDLFREPDSGLPLKCDLCDGEPEPLCVKWCLVGALSVTEREVEEPDESVKRTEMEIGLESLISRFGADVVADTVEQL 175
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166         


Chain H from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeee.......hhhhhhhhhhh......eehhhhh.eeeeeehhhheeeeee...........eeeeee..ee....................................hhhhhhh....eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z3w H   6 KKRIVKTINIDADKCNGCRACEVICSAFHAMPPYSSNNPARSRVRVVRDPLRDIYVPLYAGEYTESECIGRDKFIIDGKEYDECGFCRASCPSRDLFREPDSGLPLKCDLCDGEPEPLCVKWCLVGALSVTEREVETEMEIGLESLISRFGADVVADTVEQ 174
                                    15        25        35        45        55        65        75        85        95       105       115       125       135     ||153       163       173 
                                                                                                                                                                 141|                        
                                                                                                                                                                  150
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z3W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z3W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z3W)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    4KX  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MTE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SF4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNL  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    W  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    AD1  [ RasMol ]  +environment [ RasMol ]
    AD2  [ RasMol ]  +environment [ RasMol ]
    AD3  [ RasMol ]  +environment [ RasMol ]
    AD4  [ RasMol ]  +environment [ RasMol ]
    AD5  [ RasMol ]  +environment [ RasMol ]
    AD6  [ RasMol ]  +environment [ RasMol ]
    AD7  [ RasMol ]  +environment [ RasMol ]
    AD8  [ RasMol ]  +environment [ RasMol ]
    AD9  [ RasMol ]  +environment [ RasMol ]
    AE1  [ RasMol ]  +environment [ RasMol ]
    AE2  [ RasMol ]  +environment [ RasMol ]
    AE3  [ RasMol ]  +environment [ RasMol ]
    AE4  [ RasMol ]  +environment [ RasMol ]
    AE5  [ RasMol ]  +environment [ RasMol ]
    AE6  [ RasMol ]  +environment [ RasMol ]
    AE7  [ RasMol ]  +environment [ RasMol ]
    AE8  [ RasMol ]  +environment [ RasMol ]
    AE9  [ RasMol ]  +environment [ RasMol ]
    AF1  [ RasMol ]  +environment [ RasMol ]
    AF2  [ RasMol ]  +environment [ RasMol ]
    AF3  [ RasMol ]  +environment [ RasMol ]
    AF4  [ RasMol ]  +environment [ RasMol ]
    AF5  [ RasMol ]  +environment [ RasMol ]
    AF6  [ RasMol ]  +environment [ RasMol ]
    AF7  [ RasMol ]  +environment [ RasMol ]
    AF8  [ RasMol ]  +environment [ RasMol ]
    AF9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Met A:505 - Pro A:506   [ RasMol ]  
    Met B:505 - Pro B:506   [ RasMol ]  
    Met C:505 - Pro C:506   [ RasMol ]  
    Met D:505 - Pro D:506   [ RasMol ]  
    Met E:36 - Pro E:37   [ RasMol ]  
    Met F:36 - Pro F:37   [ RasMol ]  
    Met G:36 - Pro G:37   [ RasMol ]  
    Met H:36 - Pro H:37   [ RasMol ]  
    Phe A:508 - Pro A:509   [ RasMol ]  
    Phe B:508 - Pro B:509   [ RasMol ]  
    Phe C:508 - Pro C:509   [ RasMol ]  
    Phe D:508 - Pro D:509   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4z3w
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q39TV8_GEOMG | Q39TV8
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
  Q39TV9_GEOMG | Q39TV9
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q39TV8_GEOMG | Q39TV8
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  Q39TV9_GEOMG | Q39TV9
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q39TV8_GEOMG | Q39TV8: 4z3x 4z3y 4z3z 4z40
        Q39TV9_GEOMG | Q39TV9: 4z3x 4z3y 4z3z 4z40

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4Z3W)