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(-) Description

Title :  ZINC FINGER REGION OF HUMAN TET3 IN COMPLEX WITH CPG DNA
 
Authors :  K. Liu, C. Xu, W. Tempel, A. Dong, C. H. Arrowsmith, C. Bountra, A. M. Edwa J. Min, Structural Genomics Consortium, Structural Genomics Co (Sgc)
Date :  31 Mar 15  (Deposition) - 29 Apr 15  (Release) - 29 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.57
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Zinc Finger, Dna-Binding, Structural Genomics, Structural Genomics Consortium, Sgc, Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Liu, C. Xu, W. Tempel, A. Dong, C. H. Arrowsmith, C. Bountra, A. M. Edwards, J. Min
Zinc Finger Region Of Human Tet3 In Complex With Cpg Dna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA (5'-D(*GP*CP*CP*AP*AP*CP*GP*TP*TP*GP*GP*C)-3')
    Chains: A, B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: SYNTHETIC
    Synthetic: YES
 
Molecule 2 - METHYLCYTOSINE DIOXYGENASE
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TET3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1UNX4Ligand/IonUNKNOWN ATOM OR ION
2ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS C:57 , CYS C:60 , CYS C:63 , CYS C:89binding site for residue ZN C 101
2AC2SOFTWARECYS C:69 , CYS C:72 , CYS C:75 , CYS C:84binding site for residue ZN C 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z3C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4Z3C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z3C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z3C)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z3C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:12
                                           
                  4z3c A  1 GCCAACGTTGGC 12
                                    10  


Chain B from PDB  Type:DNA  Length:12
                                           
                  4z3c B  1 GCCAACGTTGGC 12
                                    10  


Chain C from PDB  Type:PROTEIN  Length:45
                                                                            
               SCOP domains --------------------------------------------- SCOP domains
               CATH domains --------------------------------------------- CATH domains
               Pfam domains --------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh......hhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------- PROSITE
                 Transcript --------------------------------------------- Transcript
                  4z3c C 52 KKRKRCGTCEPCRRLENCGACTSCTNRRTHQICKLRKCEVLKKKV 96
                                    61        71        81        91
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z3C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z3C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z3C)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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