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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN FACT SPT16 MIDDLE DOMAIN
 
Authors :  Y. Tsunaka, Y. Fujiwara, T. Oyama, S. Hirose, K. Morikawa
Date :  30 Mar 15  (Deposition) - 09 Mar 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.92
Chains :  Asym./Biol. Unit :  A
Keywords :  Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Tsunaka, Y. Fujiwara, T. Oyama, S. Hirose, K. Morikawa
Integrated Molecular Mechanism Directing Nucleosome Reorganization By Human Fact.
Genes Dev. V. 30 673 2016
PubMed-ID: 26966247  |  Reference-DOI: 10.1101/GAD.274183.115

(-) Compounds

Molecule 1 - FACT COMPLEX SUBUNIT SPT16
    Chains: A
    Engineered: YES
    Expression System: BACULOVIRUS EXPRESSION VECTOR PFASTBAC1-HM
    Expression System Taxid: 274590
    Fragment: UNP RESIDUES 644-930
    Gene: SUPT16H, FACT140, FACTP140
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: CHROMATIN-SPECIFIC TRANSCRIPTION ELONGATION FACTOR 140 KDA SUBUNIT,FACT 140 KDA SUBUNIT,FACTP140,FACILITATES CHROMATIN TRANSCRIPTION COMPLEX SUBUNIT SPT16,HSPT16

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4Z2N)

(-) Sites  (0, 0)

(no "Site" information available for 4Z2N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4Z2N)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Arg A:668 -Pro A:669
2Trp A:830 -Pro A:831

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z2N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z2N)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z2N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeeeeee........eeeeee...eeeeee....eeeee...eeeeeee......eeeeeeeeeeeeee..eeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....ee..hhhhheee......eeeee...eeee......eeee...eeeeeee.......eeeeeeee.......eeeeeee..hhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4z2n A 646 VKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLE 926
                                   655       665       675       685       695       705       715       725       735       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918        
                                                                                                                            744|                                                                                                                                                                        
                                                                                                                             758
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z2N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z2N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z2N)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:668 - Pro A:669   [ RasMol ]  
    Trp A:830 - Pro A:831   [ RasMol ]  
 

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  SP16H_HUMAN | Q9Y5B9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SP16H_HUMAN | Q9Y5B9: 4z2m 5e5b

(-) Related Entries Specified in the PDB File

4z2m