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(-) Description

Title :  CRYSTAL STRUCTURE OF FVO STRAIN PLASMODIUM FALCIPARUM AMA1 IN COMPLEX WITH THE RON2HP [THR2040ALA] PEPTIDE
 
Authors :  G. Wang, S. Mcgowan, R. S. Norton, M. J. Scanlon
Date :  26 Mar 15  (Deposition) - 03 Aug 16  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,C
Keywords :  Cell Invasion, Inhibitor, Ama1, Malaria (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Wang, N. Drinkwater, D. R. Drew, C. A. Macraild, D. K. Chalmers, B. Mohanty, S. S. Lim, R. F. Anders, J. G. Beeson, P. E. Thompson, S. Mcgowan, J. S. Simpson, R. S. Norton, M. J. Scanlon
Structure-Activity Studies Of Beta-Hairpin Peptide Inhibitors Of The Plasmodium Falciparum Ama1-Ron2 Interaction.
J. Mol. Biol. V. 428 3986 2016
PubMed-ID: 27422009  |  Reference-DOI: 10.1016/J.JMB.2016.07.001

(-) Compounds

Molecule 1 - APICAL MEMBRANE ANTIGEN 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 104-438
    Gene: PFFVO_05649
    Organism Scientific: PLASMODIUM FALCIPARUM VIETNAM OAK-KNOLL (FVO)
    Organism Taxid: 1036723
    Strain: FVO
 
Molecule 2 - RHOPTRY NECK PROTEIN 2
    Chains: C
    Engineered: YES
    Fragment: UNP RESIDUES 1217-1229
    Mutation: YES
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:396 , TYR A:397 , THR A:406 , ASN A:413 , HOH A:618 , HOH A:764binding site for residue GOL A 501

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:149 -A:302
2A:217 -A:247
3A:320 -A:418
4A:337 -A:409
5C:1 -C:13

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asn A:187 -Pro A:188
2Ser A:191 -Pro A:192
3Ser C:7 -Pro C:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4Z09)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4Z09)

(-) Exons   (0, 0)

(no "Exon" information available for 4Z09)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:270
                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh.........eeee....eeee......ee.eeeee........................eehhhhhhhh.........hhhhhhhhhhh.ee............eeee....eeee...........eeeee.hhhh.eeee......hhhhhh...eeeeeeeeeee..eeee....eeee..hhhhhhhhhhhhh.................eeeee....eeeee.....eeeeeeeeeeee.......ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4z09 A 108 NPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIETTFLKPVKDGGFAFPPTNPLISPMTLNGMRDFYKNNEYVKNLDELTLCSRHAGNMNPDNDKNSNYKYPAVYDYNDKKCHILYIAAQENNFCFRPAKDKLFENYTYLSKNVVDNWEEVCPRKNLENAKFGLWVDGNCEDIPHVNEFSANDLFECNKLVFELSASDQPKQRYKSHGKGYNWGNYNRETQKCEIFNVKPTCLINNSSYIATTALSHPIEVE 438
                                   117       127       137       147       157 ||    177       187       197       207       217       227       237       247       257||     282       292       302       312       322       332       342       352|      398       408       418       428       438
                                                                             159|   169|                                                                              258|                                                                           352|                                                 
                                                                              163    177                                                                               274                                                                            389                                                 


Chain C from PDB  Type:PROTEIN  Length:13
                                             
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eee......ee. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                 4z09 C   1 CFTARMSPPQQIC  13
                                    10
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4Z09)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4Z09)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4Z09)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Ser C:7 - Pro C:8   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A024UZE1_P | A0A024UZE1: 4z0d 4z0e 4z0f
        Q8IKV6_PLAF7 | Q8IKV6: 3sri 3zwz 4z0d 4z0e 4z0f

(-) Related Entries Specified in the PDB File

4z0d 4z0e 4z0f