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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRAP TRANSPORTER SOLUTE BINDING PROTEIN (IPR025997) FROM BORDETELLA BRONCHISEPTICA RB50 (BB0280, TARGET EFI-500035) MIXED OCCUPANCY DIMER, COPURIFIED CALCIUM AND PICOLINATE BOUND ACTIVE SITE VERSUS APO SITE
 
Authors :  M. W. Vetting, N. F. Al Obaidi, R. Toro, L. L. Morisco, J. Benach, J. Koss S. R. Wasserman, J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdh J. Lafleur, J. Love, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, E Function Initiative (Efi)
Date :  25 Mar 15  (Deposition) - 20 May 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A,D
Keywords :  Trap Transporter Solute Binding Protein, Enzyme Function Initiative, Efi, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, N. F. Al Obaidi, R. Toro, L. L. Morisco, J. Benach, J. Koss, S. R. Wasserman, J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdhury, J. Lafleur, J. Love, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of A Trap Transporter Solute Binding Protein (Ipr025997) From Bordetella Bronchiseptica Rb50 (Bb0280, Target Efi-500035) Mixed Occupancy Dimer, Copurified Calcium And Picolinate Bound Active Site Versus Apo Site
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRAP TRANSPORTER SOLUTE BINDING PROTEIN
    Chains: A, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: BORDETELLA BRONCHISEPTICA
    Organism Taxid: 257310
    Strain: RB50

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
16PC1Ligand/IonPYRIDINE-2-CARBOXYLIC ACID
2CA1Ligand/IonCALCIUM ION
3NHE1Ligand/Ion2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
4PEG2Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:158 , GLU A:216 , TRP A:217 , 6PC A:404 , HOH A:667binding site for residue CA A 401
2AC2SOFTWAREARG A:123 , ASN A:126 , SER A:275 , HOH A:540 , HOH A:546 , ASN D:126binding site for residue PEG A 402
3AC3SOFTWAREPRO A:238 , PHE A:302 , MET A:308 , HOH A:519 , HOH A:556 , ALA D:353 , TYR D:357 , HOH D:585binding site for residue PEG A 403
4AC4SOFTWAREGLN A:158 , ARG A:179 , GLY A:181 , GLU A:216 , TRP A:217 , ILE A:218 , CA A:401 , HOH A:707binding site for residue 6PC A 404
5AC5SOFTWAREILE D:49 , ARG D:179 , ILE D:180 , GLY D:181 , GLU D:242 , HOH D:506 , HOH D:524 , HOH D:703 , HOH D:715binding site for residue NHE D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YZZ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ser A:237 -Pro A:238
2Ser D:237 -Pro D:238

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YZZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YZZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4YZZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee.......hhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhh....eee.hhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee......eee.....hhhhh...eee...hhhhhhhhhh.eee..hhhhhhhhhhhh...ee...hhhhhhhhhhhhh..eeee........eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yzz A  31 NPTVRWRMSTSWPKSLDTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPSAQNMDAVSNGTVECNHVLSTMYIGKNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMGGWYRKEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPPGDIYPALEKGTIDAAEWIGPYDDEKLGFNKVAPYYYSPGWFEGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANYDARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTELSEKNPDFKAIYPGWKKFQEDEAGWFRVAENALDNYTFAAVARAQ 366
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Chain D from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhh....eee.hhhhhh..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeee......eee.....hhhhh...eee.hhhhhhhhhhhh.eee..hhhhhhhhhhh....ee...hhhhhhhhhhhhh..eeee........eeeeeeehhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yzz D  31 NPTVRWRMSTSWPKSLDTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPSAQNMDAVSNGTVECNHVLSTMYIGKNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMGGWYRKEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPPGDIYPALEKGTIDAAEWIGPYDDEKLGFNKVAPYYYSPGWFEGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANYDARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTELSEKNPDFKAIYPGWKKFQEDEAGWFRVAENALDNYTFAAVARAQ 366
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YZZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YZZ)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4YZZ)

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  Cis Peptide Bonds
    Ser A:237 - Pro A:238   [ RasMol ]  
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