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(-) Description

Title :  FLIM(SPOA)::FLIN FUSION PROTEIN
 
Authors :  R. Q. Notti, C. E. Stebbins
Date :  22 Mar 15  (Deposition) - 03 Jun 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.56
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D  (1x)
Biol. Unit 3:  E  (1x)
Keywords :  Type Iii Secretion System, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Q. Notti, S. Bhattacharya, M. Lilic, C. E. Stebbins
A Common Assembly Module In Injectisome And Flagellar Type Iii Secretion Sorting Platforms.
Nat Commun V. 6 7125 2015
PubMed-ID: 25994170  |  Reference-DOI: 10.1038/NCOMMS8125

(-) Compounds

Molecule 1 - FLAGELLAR MOTOR SWITCH PROTEIN FLIM,FLAGELLAR MOTOR SWITCH PROTEIN FLIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 245-334,UNP RESIDUES 5-137,UNP RESIDUES 245- 334,UNP RESIDUES 5-137
    Gene: FLIM, CHEC2, FLA AII, FLA QII, STM1976, FLIN, FLAN, MOTD, STM1977
    Organism Scientific: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
    Organism Taxid: 99287
    Strain: LT2 / SGSC1412 / ATCC 700720
 
Molecule 2
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
 
Molecule 3
    Chains: D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: FLIN, UMN798_2086, FLIN, FLAN, MOTD, STM1977
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. 798, SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / ATCC 700720)
    Organism Taxid: 1008297, 99287
    Strain: LT2 / SGSC1412 / ATCC 700720
 
Molecule 4 - AMBIGUOUS PEPTIDE DENSITY
    Chains: E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
    Organism Taxid: 90371
    Other Details: THIS PEPTIDE FRAGMENT WAS BUILT INTO A REGION OF ELECTRON DENSITY FOR WHICH THE SEQUENCE COULD NOT BE DEFINITIVELY DETERMINED.

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): ABC  
Biological Unit 2 (1x):    D 
Biological Unit 3 (1x):     E

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1IMD1Ligand/IonIMIDAZOLE
2MSE7Mod. Amino AcidSELENOMETHIONINE
3UNK6Mod. Amino Acid
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1IMD1Ligand/IonIMIDAZOLE
2MSE7Mod. Amino AcidSELENOMETHIONINE
3UNK-1Mod. Amino Acid
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1IMD-1Ligand/IonIMIDAZOLE
2MSE-1Mod. Amino AcidSELENOMETHIONINE
3UNK-1Mod. Amino Acid
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1IMD-1Ligand/IonIMIDAZOLE
2MSE-1Mod. Amino AcidSELENOMETHIONINE
3UNK-1Mod. Amino Acid

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:66 , TYR A:73 , VAL A:201 , LEU C:132binding site for residue IMD A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YXB)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Val A:69 -Asn A:70
2Gly D:103 -Ala D:104
3Ala D:110 -Asp D:111

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YXB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YXB)

(-) Exons   (0, 0)

(no "Exon" information available for 4YXB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeehhhhhhh....eeee.....eeeee..eeeeeeeeee...eeeeeeeeehhhhhhhhhh.....hhhhh.eeeeeeeeeeeeehhhhhhh.....eeeeeee....eeeee..eeeeeeeeeee..eeeeeeeee.hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yxb A  18 ELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPILNSLNEAmQDIDLImDIPVKLTVELGRTRmTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERmRRLSR 227
                                    27        37        47        57        67        77        87  |||  146 |     156      |166       176       186       196       206       216     | 226 
                                                                                                   90||      |            163-MSE                                                    222-MSE 
                                                                                                   140|      |                                                                               
                                                                                                    141-MSE  |                                                                               
                                                                                                           148-MSE                                                                           


Chain B from PDB  Type:PROTEIN  Length:172
                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.......eeeeeeeeeeeeeehhhhhhh....eee......eeeee..eeeeeeeeeee..eeeeeeeeehhhhhhhhhh.hhhhhh.eeeeeeeeeeeeeehhhhhhh....eeeeeee....eeeee..eeeeeeeeeee..eeeeeeeee.hhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yxb B   4 DNWRDNLVRQVQHSELELVANFADIPLRLSQILKLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPILNSLNEDIDLImDIPVKLTVELGRTRmTIKELLRLTQGSVVALDGLAGEPLDILINGYLIAQGEVVVVADKYGVRITDIITPSERmRRLSR 227
                                    13        23        33        43        53        63        73        83      |145  |    155       165       175       185       195       205       215      |225  
                                                                                                                 90|    |            163-MSE                                                    222-MSE 
                                                                                                                 143    |                                                                               
                                                                                                                      148-MSE                                                                           


Chain C from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ..ee.. Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4yxb C 128 VFQQLG 133


Chain D from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ..hhhhhh. Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 4yxb D 103 GALDDLWAD 111


Chain E from PDB  Type:PROTEIN  Length:6
                                      
               SCOP domains ------ SCOP domains
               CATH domains ------ CATH domains
               Pfam domains ------ Pfam domains
         Sec.struct. author ...... Sec.struct. author
                 SAPs(SNPs) ------ SAPs(SNPs)
                    PROSITE ------ PROSITE
                 Transcript ------ Transcript
                 4yxb E 301 xxxxxx 306
                            ||||||
                          301-UNK|
                           302-UNK
                            303-UNK
                             304-UNK
                              305-UNK
                               306-UNK
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YXB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YXB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YXB)

(-) Gene Ontology  (9, 17)

Asymmetric Unit(hide GO term definitions)

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    Val A:69 - Asn A:70   [ RasMol ]  
 
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  FLIN_SALTY | P26419
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 Related Entries

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        FLIM_SALTY | P26418: 4yxc
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