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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ROQ DOMAIN OF HUMAN ROQUIN-1
 
Authors :  A. Dong, Q. Zhang, Y. Li, W. Tempel, C. Bountra, C. H. Arrowsmith, A. M. Ed Y. Tong, Structural Genomics Consortium (Sgc)
Date :  20 Mar 15  (Deposition) - 22 Apr 15  (Release) - 22 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Roq, Rna Binding Domain, E3 Ubiquitin Ligase, Structural Genomics, Structural Genomics Consortium, Sgc, Transcription, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Q. Zhang, A. Dong, Y. Li, W. Tempel, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong
Crystal Structure Of The Roq Domain Of Human Roquin-1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ROQUIN-1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21(DE3)-V2R-PRARE2
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: ROQ DOMAIN (UNP RESIDUES 159-328)
    Gene: RC3H1, KIAA2025, RNF198
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ROQUIN, RING FINGER AND C3H ZINC FINGER PROTEIN 1, RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1, RING FINGER PROTEIN 198

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 24)

Asymmetric/Biological Unit (6, 24)
No.NameCountTypeFull Name
1CL5Ligand/IonCHLORIDE ION
2EDO2Ligand/Ion1,2-ETHANEDIOL
3GOL1Ligand/IonGLYCEROL
4MSE8Mod. Amino AcidSELENOMETHIONINE
5UNX7Ligand/IonUNKNOWN ATOM OR ION
6ZN1Ligand/IonZINC ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:277 , HIS A:316 , CL A:404 , CL A:405binding site for residue ZN A 401
2AC2SOFTWARETYR A:250 , ARG A:251 , SER A:253binding site for residue GOL A 402
3AC3SOFTWARELEU A:296 , ILE A:298 , TRP A:303binding site for residue EDO A 403
4AC4SOFTWAREALA A:185 , GLU A:277 , ARG A:281 , HIS A:316 , ZN A:401binding site for residue CL A 404
5AC5SOFTWAREGLU A:277 , ZN A:401binding site for residue CL A 405
6AC6SOFTWAREARG A:188 , TYR A:276 , GLU A:277 , HOH A:585binding site for residue CL A 406
7AC7SOFTWARESER A:312 , LYS A:314 , SER A:315 , CL A:408binding site for residue CL A 407
8AC8SOFTWARESER A:312 , HIS A:313 , SER A:315 , HIS A:316 , CL A:407 , HOH A:508binding site for residue CL A 408
9AC9SOFTWARETYR B:250 , SER B:253 , CYS B:254 , PHE B:255 , LYS B:323 , HOH B:509binding site for residue EDO B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YWQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YWQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YWQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YWQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4YWQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh..eeee.......eeee.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ywq A 177 QQLSSNLWAAVRARGCQFLGPAmQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLmQLKEEFRTYEALRREHDSQIVQIAmEAGLRIAPDQWSSLLYGDQSHKSHmQSIIDKLQTPA 328
                                   186       196  |    206       216       226       236       246       256       266|      276       286     | 296       306       316|      326  
                                                199-MSE                                                             267-MSE                  292-MSE                  317-MSE       


Chain B from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eehhhhhhhhhhhhh......hhhhhhhhhhhhhhh..eeee......eeee.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh...hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ywq B 178 QLSSNLWAAVRARGCQFLGPAmQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDDSSLmQLKEEFRTYEALRREHDSQIVQIAmEAGLRIAPDQWSSLLYGDQSHKSHmQSIIDKLQTPA 328
                                   187       197 |     207       217       227       237       247       257   ||  268       278       288   |   298       308       318       328
                                               199-MSE                                                       261|   |                      292-MSE                  317-MSE       
                                                                                                              263   |                                                             
                                                                                                                  267-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YWQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YWQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YWQ)

(-) Gene Ontology  (35, 35)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        RC3H1_HUMAN | Q5TC82: 3x1o 4qik 4qil 4ulw

(-) Related Entries Specified in the PDB File

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