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(-) Description

Title :  MERCURIC REDUCTASE FROM METALLOSPHAERA SEDULA
 
Authors :  J. H. Artz, O. A. Zadvornyy, S. White, J. W. Peters
Date :  20 Mar 15  (Deposition) - 16 Sep 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.62
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Mercuric Reductase, Fad, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. H. Artz, S. N. White, O. A. Zadvornyy, C. J. Fugate, D. Hicks, G. H. Gauss, M. C. Posewitz, E. S. Boyd, J. W. Peters
Biochemical And Structural Properties Of A Thermostable Mercuric Ion Reductase From Metallosphaera Sedula.
Front Bioeng Biotechnol V. 3 97 2015
PubMed-ID: 26217660  |  Reference-DOI: 10.3389/FBIOE.2015.00097

(-) Compounds

Molecule 1 - MERCURIC REDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MSED_1241
    Organism Scientific: METALLOSPHAERA SEDULA (STRAIN ATCC 51363 / DSM 5348)
    Organism Taxid: 399549
    Strain: ATCC 51363 / DSM 5348

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL5Ligand/IonGLYCEROL
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GOL10Ligand/IonGLYCEROL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:8 , TYR A:9 , GLY A:10 , ALA A:11 , ALA A:12 , GLY A:31 , LYS A:32 , GLY A:37 , THR A:38 , CYS A:39 , VAL A:42 , GLY A:43 , CYS A:44 , SER A:47 , LYS A:48 , GLY A:104 , ALA A:106 , ALA A:129 , THR A:130 , GLY A:131 , ASN A:150 , ARG A:253 , LEU A:259 , GLY A:291 , ASP A:292 , MET A:298 , LEU A:299 , GLU A:300 , ALA A:303 , PHE A:332 , MET A:422 , PHE A:423 , HOH A:601 , HOH A:605 , HOH A:609 , HOH A:623 , HOH A:636 , HOH A:652 , HOH A:684 , HOH A:695 , HOH A:707binding site for residue FAD A 501
2AC2SOFTWAREILE A:109 , GLU A:202 , GLU A:206 , PHE A:376 , HOH A:604 , HOH A:655binding site for residue GOL A 502
3AC3SOFTWARELEU A:51 , TYR A:52 , PHE A:332 , THR A:333 , ASN A:336 , ASN A:395 , HOH A:610 , HOH A:683 , HOH A:731 , HOH A:739binding site for residue GOL A 503
4AC4SOFTWARETYR A:52 , LYS A:59 , GLN A:334 , ILE A:370 , GLU A:394 , HOH A:630 , HOH A:694 , HOH A:703binding site for residue GOL A 504
5AC5SOFTWAREPHE A:72 , ARG A:158 , ARG A:159 , ILE A:160 , HOH A:629 , HOH A:719binding site for residue GOL A 505
6AC6SOFTWARELEU A:280 , LEU A:294 , GLN A:306 , VAL A:322 , GLU A:324 , HOH A:686binding site for residue GOL A 506

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:39 -A:44

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gln A:334 -Pro A:335
2Phe A:423 -Pro A:424

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YWO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YWO)

(-) Exons   (0, 0)

(no "Exon" information available for 4YWO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:444
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeee..hhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh..eeee..eeeee..eeee..eeeeeeeeee...eee......hhhhhh..hhhhhhh......eeeee..hhhhhhhhhhhhh...eeeee..........hhhhhhhhhhhhhhh..eee....eeeeee...eeeee..eeeee.eeee...eee....hhhhhh.....................eee.hhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhh.eee....eeeeee.hhhhhhh....eeeeeee...hhhhhhh.....eeeeeee..eeeeeeeee.hhhhhhhhhhhhhhh..hhhhhhh........hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ywo A  -3 SQDPMHKLAIIGYGAAGFAAMIKANELGVKPVLIGKGEIGGTCVNVGCVPSKRMLYIAEIYKKAREVTGSEVYPPFSSFQEKDGLVQEMRKTKYEDLLSYYDVELIQGEARFISPHAVKVNGQVIEAEKFVIATGSSPLIPRIPGLDKVGFWTNREALSPDRRIDSLAVIGGRALALEFAQMYSRMKVEVAILQRSPVLIPDWEPEASVEARRIMENDGVAVVTGVNVKEVRKGAGKIVITDKGEVEADEILLATGRKPNVDLGLENAGVRLNERGGIKVDDELRTDNPHIYAAGDVLGGKMLEALAGRQGSIATENALTGSHKRVDENAVPQVIFTQPNLARVGLTEAEARAKEGEVEARVLPMSSVAKAEIINSRLGFVKMVTMNGRIVGVHAVGENVAEMIGEAALAIRFGATVHDLIDTVHMFPTIAESLRLVALAFRSD 440
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YWO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YWO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YWO)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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