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(-) Description

Title :  PYROCOCCUS FURIOSUS MCM N-TERMINAL DOMAIN WITH ZINC-BINDING SUBDOMAIN B DELETED
 
Authors :  C. A. Froelich, E. J. Enemark
Date :  20 Mar 15  (Deposition) - 23 Sep 15  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Mcm, Helicase, Replication, Ob-Fold, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. A. Froelich, A. Nourse, E. J. Enemark
Mcm Ring Hexamerization Is A Prerequisite For Dna-Binding.
Nucleic Acids Res. V. 43 9553 2015
PubMed-ID: 26365238  |  Reference-DOI: 10.1093/NAR/GKV914

(-) Compounds

Molecule 1 - CELL DIVISION CONTROL PROTEIN 21
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)-RIPL
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 2-130, 182-256
    Gene: PF0482
    Mutation: YES
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: ATCC 43587 / DSM 3638 / JCM 8422 / VC1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4YWK)

(-) Sites  (0, 0)

(no "Site" information available for 4YWK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YWK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:129 -Pro A:130
2Lys B:129 -Pro B:130

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YWK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YWK)

(-) Exons   (0, 0)

(no "Exon" information available for 4YWK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh......hhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.....ee.hhhhhhhh...eeeeeeeeeeeee..eeeeeee.hhhhh..eeeeee.......eeeeeeeeeeeee...eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ywk A   1 VDREEMIERFANFLREYTDEDGNPVYRGKITDLLTPKRSVAIDWMHLNSFDSELAHEVIENPEEGISAAEDAIQIVLREDFQREDVGKIHARFYNLPETLMVKDIGAEHINKLIQVEGIVTRVGEIKPFQSFRIQDRPETLPRFIDGILLVALPGDRVIVTGILRVVLEKTPIFRKILEVNHIE 250
                                    10        20        30    ||  42        52        62        72        82        92       102       112       122       183       193||     208|      223       233|      246    
                                                             35|                                                                                         130|         194|     208|                233|             
                                                              38                                                                                          182          200      214                 237             


Chain B from PDB  Type:PROTEIN  Length:193
                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh......hhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeee.....ee.hhhhhhhh..eeeeeeeeeeeeee..eeeeeee.hhhhh......eeeeee..........eeeeeeeeeeeee.....eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ywk B   1 VDREEMIERFANFLREYTDEDGNPVYRGKITDLLTPKRSVAIDWMHLNSFDSELAHEVIENPEEGISAAEDAIQIVLREDFQREDVGKIHARFYNLPETLMVKDIGAEHINKLIQVEGIVTRVGEIKPFQSFRIQDRPETLKGEMPRFIDGILLDDDVALPGDRVIVTGILRVVLEKRETPIFRKILEVNHIE 250
                                    10        20        30    ||  42        52        62        72        82        92       102       112       122       183       193  ||   204     ||216       226       237       247   
                                                             35|                                                                                         130|           196|         210|                   235|             
                                                              38                                                                                          182            198          213                    237
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YWK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YWK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YWK)

(-) Gene Ontology  (9, 9)

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  Cis Peptide Bonds
    Lys A:129 - Pro A:130   [ RasMol ]  
    Lys B:129 - Pro B:130   [ RasMol ]  
 
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8U3I4_PYRFU | Q8U3I4: 4pof 4pog 4r7y 4r7z 4ywl 4ywm 5iy0

(-) Related Entries Specified in the PDB File

4pof 4POF CONTAINS THE WILD-TYPE PROTEIN AS A HEXAMER
4ywl
4ywm