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(-) Description

Title :  STRUCTURE OF THERMOTOGA MARITIMA DISA IN COMPLEX WITH 3'-DATP/MN2+
 
Authors :  M. Mueller, T. Deimling, K. -P. Hopfner, G. Witte
Date :  20 Mar 15  (Deposition) - 03 Jun 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (4x)
Keywords :  C-Di-Amp Synthesis, Dac Domain, Inhibitor, Pre-Reaction State, Dna Binding Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Muller, T. Deimling, K. P. Hopfner, G. Witte
Structural Analysis Of The Diadenylate Cyclase Reaction Of Dna-Integrity Scanning Protein A (Disa) And Its Inhibition By 3'-Datp.
Biochem. J. V. 469 367 2015
PubMed-ID: 26014055  |  Reference-DOI: 10.1042/BJ20150373

(-) Compounds

Molecule 1 - DNA INTEGRITY SCANNING PROTEIN DISA
    Chains: A, B
    EC Number: 2.7.7.85
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA
    Gene: DISA, TM_0200
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336
    Synonym: CYCLIC DI-AMP SYNTHASE,C-DI-AMP SYNTHASE,DIADENYLATE CYCLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (4x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
13AT2Ligand/Ion3'-DEOXYADENOSINE-5'-TRIPHOSPHATE
2MN4Ligand/IonMANGANESE (II) ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
13AT8Ligand/Ion3'-DEOXYADENOSINE-5'-TRIPHOSPHATE
2MN-1Ligand/IonMANGANESE (II) ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:75 , 3AT A:403 , HOH A:519 , HOH B:557binding site for residue MN A 401
2AC2SOFTWAREGLU A:229 , ASP A:232 , ASP A:233binding site for residue MN A 402
3AC3SOFTWAREASP A:75 , MN A:401 , HOH A:519 , HOH A:535 , LEU B:39 , ASP B:75 , GLY B:76 , VAL B:92 , LEU B:94 , GLY B:106 , THR B:107 , ARG B:108 , HIS B:109 , THR B:111 , SER B:127 , ARG B:128 , ARG B:130 , 3AT B:401binding site for residue 3AT A 403
4AC4SOFTWARELEU A:39 , ASP A:75 , GLY A:76 , VAL A:92 , HIS A:93 , LEU A:94 , GLY A:106 , THR A:107 , ARG A:108 , HIS A:109 , THR A:111 , SER A:127 , ARG A:128 , ARG A:130 , 3AT A:403 , ASP B:75 , MN B:402 , HOH B:513 , HOH B:517binding site for residue 3AT B 401
5AC5SOFTWAREASP B:75 , 3AT B:401 , HOH B:513 , HOH B:549binding site for residue MN B 402
6AC6SOFTWAREGLU B:229 , ASP B:232 , ASP B:233binding site for residue MN B 403

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YVZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YVZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YVZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YVZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4YVZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....hhhhhhhhhhhhh...eeeee..hhhhhh..eeeeeeeeee.hhhhhhhhh....eeee.....eeeeeeeee...........hhhhhhhhhhhhhhh.eeeee......eeeee..eeee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhh.ee...hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yvz A   7 VPQELIEKIKLISPGTELRKALDDIINANFGALIFLVDDPKKYEDVIQGGFWLDTDFSAEKLYELSKMDGAIVLSEDITKIYYANVHLVPDPTIPTGETGTRHRTAERLAKQTGKVVIAVSRRRNIISLYYKNYKYVVNQVDFLISKVTQAISTLEKYKDNFNKLLSELEVLELENRVTLADVVRTLAKGFELLRIVEEIRPYIVELGEEGRLARMQLRELTEDVDDLLVLLIMDYSSEEVEEETAQNILQDFITRREPSPISISRVLGYDVQQAAQLDDVLVSARGYRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKT 355
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346         


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....hhhhhhhhhhhhhh..eeeeee.hhhhhh..eeeeeeeeee.hhhhhhhhh....eeeee....eeeeeeeee...........hhhhhhhhhhhhhhh.eeeee......eeeee..eeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhh.....hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4yvz B   7 VPQELIEKIKLISPGTELRKALDDIINANFGALIFLVDDPKKYEDVIQGGFWLDTDFSAEKLYELSKMDGAIVLSEDITKIYYANVHLVPDPTIPTGETGTRHRTAERLAKQTGKVVIAVSRRRNIISLYYKNYKYVVNQVDFLISKVTQAISTLEKYKDNFNKLLSELEVLELENRVTLADVVRTLAKGFELLRIVEEIRPYIVELGEEGRLARMQLRELTEDVDDLLVLLIMDYSSEEVEEETAQNILQDFITRREPSPISISRVLGYDVQQAAQLDDVLVSARGYRLLKTVARIPLSIGYNVVRMFKTLDQISKASVEDLKKVEGIGEKRARAISESISSLKHRKT 355
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YVZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YVZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YVZ)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DISA_THEMA | Q9WY43: 3c1y 3c1z 3c21 3c23 4yxj 4yxm

(-) Related Entries Specified in the PDB File

3c1y SAME PROTEIN WITH REACTION PRODUCT
3c1z SAME PROTEIN - LIGAND-FREE FORM
3c21 SAME PROTEIN WITH REACTION PRODUCT
3c23 SAME PROTEIN WITH NON-REACTIVE LIGAND