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(-) Description

Title :  CRYTSAL STRUCTURE OF HUMAN PLEIOTROPIC REGULATOR 1 (PRL1)
 
Authors :  A. Dong, H. Zeng, C. Xu, W. Tempel, Y. Li, H. He, C. Bountra, C. H. Arrowsmi A. M. Edwards, P. J. Brown, J. Min, H. Wu, Structural Genomics Consor (Sgc)
Date :  19 Mar 15  (Deposition) - 15 Apr 15  (Release) - 15 Apr 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Wd40 Repeat, Mrna Processing, Mrna Splicing, Structural Genomics, Structural Genomics Consortium, Sgc, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Zeng, A. Dong, C. Xu, W. Tempel, Y. Li, H. He, C. Bountra, C. H. Arrowsmith, A. M. Edwards, P. J. Brown, J. Min, H. Wu, Structural Genomics Consortium (Sgc)
Crytsal Structure Of Human Pleiotropic Regulator 1 (Prl1).
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PLEIOTROPIC REGULATOR 1
    Chains: A
    Engineered: YES
    Expression System: INSECT CELL EXPRESSION VECTOR PTIE1
    Expression System Plasmid: PFBOH-MHL
    Expression System Strain: SF9
    Expression System Taxid: 266783
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 141-514
    Gene: PLRG1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 18)

Asymmetric Unit (3, 18)
No.NameCountTypeFull Name
1CL5Ligand/IonCHLORIDE ION
2NA1Ligand/IonSODIUM ION
3UNX12Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NA-1Ligand/IonSODIUM ION
3UNX24Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:250 , TYR A:292 , GLY A:293 , HOH A:738 , HOH A:782 , HOH A:784 , HOH A:825binding site for residue NA A 601
2AC2SOFTWAREGLN A:407 , ASN A:408 , HOH A:814binding site for residue CL A 602
3AC3SOFTWAREARG A:282 , HIS A:283 , LYS A:320 , HOH A:722 , HOH A:836binding site for residue CL A 603
4AC4SOFTWAREGLN A:339 , ALA A:340 , HIS A:384 , HOH A:821 , HOH A:826binding site for residue CL A 604
5AC5SOFTWARETRP A:190 , GLN A:448 , ARG A:449binding site for residue CL A 605
6AC6SOFTWARELYS A:399 , ASP A:402 , GLY A:403 , SER A:404binding site for residue CL A 606

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YVD)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Glu A:342 -Pro A:343
2Phe A:400 -Pro A:401

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YVD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YVD)

(-) Exons   (0, 0)

(no "Exon" information available for 4YVD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeeee......eeeeee.....eeeeee....eeeee.....eeeee......eeeeee.....eeeeee....eeeee....eeeee.......eeeeee.....eeeeee...eeeeee.....eeeeee.....eeeeee......eeeee....eeeee....eeeeee........eeee.....eeeee....eeeee....eeeeee......eeeeee....eeeeee....eeeee.....eeeee.....eeeeee.....eeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4yvd A 190 WHPPWKLYRVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFIQNLSGHNAIINTLTVNSDGVLVSGADNGTMHLWDWRTGYNFQRVHAESGIFACAFDQSESRLLTAEADKTIKVYRED 492
                                   199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449  ||   468       478       488    
                                                                                                                                                                                                                                                                                                452|                              
                                                                                                                                                                                                                                                                                                 462
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YVD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YVD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YVD)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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        PLRG1_HUMAN | O43660: 5mqf

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