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(-) Description

Title :  STRUCTURE OF THE KOW2-KOW3 DOMAIN OF TRANSCRIPTION ELONGATION FACTOR SPT5.
 
Authors :  P. A. Meyer, S. Li, M. Zhang, K. Yamada, Y. Takagi, G. A. Hartzog, J. Fu
Date :  17 Mar 15  (Deposition) - 12 Aug 15  (Release) - 16 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Transcription, Spt5, Rna Processing, Transcription Elongation. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. A. Meyer, S. Li, M. Zhang, K. Yamada, Y. Takagi, G. A. Hartzog, J. Fu
Structures And Functions Of The Multiple Kow Domains Of Transcription Elongation Factor Spt5.
Mol. Cell. Biol. V. 35 3354 2015
PubMed-ID: 26217010  |  Reference-DOI: 10.1128/MCB.00520-15

(-) Compounds

Molecule 1 - TRANSCRIPTION ELONGATION FACTOR SPT5
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24B(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SPT5, YML010W, YM9571.08
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / S288C)
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C
    Synonym: CHROMATIN ELONGATION FACTOR SPT5

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE4Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 7)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE
3SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:544 , GLY A:545 , ARG A:548 , HOH A:805binding site for residue SO4 A 701
2AC2SOFTWAREPHE B:534 , GLN B:535 , LYS B:582 , ILE B:593 , HOH B:805 , HOH B:806 , HOH B:822 , HOH B:837 , HOH B:899 , HOH B:908binding site for residue SO4 B 701
3AC3SOFTWAREARG A:556 , ARG B:556 , HIS B:589 , HOH B:841 , HOH B:844binding site for residue SO4 B 702
4AC4SOFTWAREILE B:625 , THR B:626 , ASN B:629 , HOH B:895 , HOH B:923binding site for residue SO4 B 703
5AC5SOFTWAREASP B:538 , ARG B:539 , LYS B:582 , SER B:631 , LYS B:632 , HOH B:817 , HOH B:881 , HOH B:921binding site for residue GOL B 704
6AC6SOFTWARESER A:620 , ARG A:621 , ASN B:544 , GLY B:545 , HOH B:834binding site for residue GOL B 705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4YTL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4YTL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4YTL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4YTL)

(-) Exons   (0, 0)

(no "Exon" information available for 4YTL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee........eeeeeeee..eeeeee......eeee...eee......eeee........eeeeeeee..eeeeee.....eeeee...ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4ytl A 534 FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGFTTPLEFPISTLRKIFEPGDHVTVINGEHQGDAGLVLmVEQGQVTFmSTQTSREVTITANNLSK 632
                                   543       553       563       573       583       593       603  |    613 |     623         
                                                                                                  606-MSE  615-MSE             


Chain B from PDB  Type:PROTEIN  Length:99
                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee........eeeeeee...eeeeee......eeee...eee......eeee........eeeeeeee..eeeeee.....eeeee...ee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                 4ytl B 534 FQPGDRIEVLNGEQRGSKGIVTRTTKDIATIKLNGFTTPLEFPISTLRKIFEPGDHVTVINGEHQGDAGLVLmVEQGQVTFmSTQTSREVTITANNLSK 632
                                   543       553       563       573       583       593       603  |    613 |     623         
                                                                                                  606-MSE  615-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4YTL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4YTL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4YTL)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        SPT5_YEAST | P27692: 2exu 4ytk

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